Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m01
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 199 IPGILKIVQVCCNIIGFICIKVSWSWVSAIFYNMVYWIGNILTILLLLAYT 351
           + G L +V + C    + CI     W   + Y    +   +LTILL+   T
Sbjct: 209 LAGTLAVVWIMC----YFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLT 255


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 199 IPGILKIVQVCCNIIGFICIKVSWSWVSAIFYNMVYWIGNILTILLLLAYT 351
           + G L +V + C    + CI     W   + Y    +   +LTILL+   T
Sbjct: 262 LAGTLAVVWIMC----YFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLT 308


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 598 VICSL*IFIVVADPCSILCI 539
           ++C L  F+++A P ++ CI
Sbjct: 562 LVCYLNTFLLLATPTTVTCI 581


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 598 VICSL*IFIVVADPCSILCI 539
           ++C L  F+++A P ++ CI
Sbjct: 652 LVCYLNTFLLLATPTTVTCI 671


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 290 STTWYTGLETF*LFYFFSHTLVILLRSM 373
           + TWY+   TF  F  ++H +   L  M
Sbjct: 182 NVTWYSQCVTFNAFPTYTHEITYSLFGM 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,344
Number of Sequences: 438
Number of extensions: 4734
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)