Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l24
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 17  YVKKKMNKILFYLFVYAVVKSAAYDPLKAPNYFEE 121
           YV   ++++  ++F  AVV   A   L+AP  +++
Sbjct: 508 YVAMVLDRLFLWIFTLAVVVGTAGIILQAPTLYDD 542


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 568 QQAAVTAGVDKITIDHLLLRQINQFVMFDCKLTFQTAQSGKRPAGATHSLIFYAS 404
           Q+  VT  V +I+ D L      +F  FD K T   +     P+  TH    YAS
Sbjct: 761 QETGVTLVVQEISSDGL------KFA-FDVKTTLNISDIALYPSQTTHGYDIYAS 808


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 423 ECVAPAGRLPLWAVW 467
           +C+ P G LPL   W
Sbjct: 604 QCIVPTGDLPLNIRW 618


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,083
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)