Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l21
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    29   0.52 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   3.7  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   6.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   6.4  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 525 QYYKSSCRRIKKSFFKYNGW-NEQLRFCRTEKFCSLVNLQLNKDGSKKLKRVQR 367
           ++YK+SC  IK S+ + +G+ N +  F   E  C L     +K  S  +K +Q+
Sbjct: 715 RFYKASCSEIKLSYIENSGFTNLEKSFLSEESHCGLE----SKTDSLVIKNIQK 764


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -2

Query: 723 RIRLSFEKCSKGIEVPLYEKLLLNHMM-----RINDDNLQWPSLMNNKKIMEWNANRGFD 559
           + R+ + K +    + LY++ L+++       RI      W   M    +  W   +  D
Sbjct: 181 KARILYAKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLD 240

Query: 558 ESNKILHVYIGQYY 517
             N ++  YIG YY
Sbjct: 241 PKNTVVDTYIGLYY 254


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 513 SSCRRIKKSFFKYNGWNEQLRFCRTEKFCSLVNLQLNKDGSKKL 382
           S C R +KSF + N     +   R E   + +  QLN   SKKL
Sbjct: 138 SQCNRTRKSFVELNALQTSIDTIRNE--LNELRDQLNDSESKKL 179


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -3

Query: 209 YRSANAPAADINDTFLEKISIPRGHRDCCDAKVYETAVREFVEETGR 69
           Y+  NAPAA I DT+ E   +P GHR   + +   T + E +EE  R
Sbjct: 730 YKQLNAPAAAIPDTW-ELCLLP-GHR-IGEPEYLFTRIDESMEEEWR 773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,350
Number of Sequences: 5004
Number of extensions: 60541
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)