Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l21
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF016445-10|AAC69056.2|  178|Caenorhabditis elegans Hypothetical...    28   6.0  

>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 696 SKGIEVPLYEKLLLN--HMMRINDDNLQWPSLMNNKKIMEW 580
           S GI+ P + K L++  H  +I D   QWPS++ N  + EW
Sbjct: 238 SLGIKNPDHRKKLMSDIHSWKIID---QWPSVVPNNSLREW 275


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 696 SKGIEVPLYEKLLLN--HMMRINDDNLQWPSLMNNKKIMEW 580
           S GI+ P + K L++  H  +I D   QWPS++ N  + EW
Sbjct: 374 SLGIKNPDHRKKLMSDIHSWKIID---QWPSVVPNNSLREW 411


>U41026-3|AAL02447.3|  817|Caenorhabditis elegans Hypothetical
           protein C28G1.3 protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 717 RLSFEKCSKGIEVPLYEKLLLNHMMRINDDNLQWPSLMNNKKIMEWNANRGFDESNKIL 541
           ++S   C K  E+  Y KL+ N    ++   +  P L N  K+ E  +NR + ++ K L
Sbjct: 119 QISQRLCQKKQEIVRYRKLMKNAKTAMDQIAVCLPVLENYAKLQEQMSNRKYYQALKTL 177


>AF016445-10|AAC69056.2|  178|Caenorhabditis elegans Hypothetical
           protein T05B4.4 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 511 QLSPHKKKFFQIQRVERAAAVLQNRKIL*FSQLATEQ 401
           +LS +K   FQI + +R    ++NR +  FS+L  +Q
Sbjct: 25  ELSDYKLHKFQIHKTQRFLLKIENRPLFKFSKLQVKQ 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,692
Number of Sequences: 27780
Number of extensions: 354852
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)