Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l19
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...   124   2e-29
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    58   1e-09
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    32   0.086
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    32   0.086
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.3  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.6  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.5  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   7.5  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   9.9  

>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score =  124 bits (298), Expect = 2e-29
 Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
 Frame = +3

Query: 333 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAAEIF 506
           L ++W K ++ ++  + +  KT  LPLARIKK+MK D++VK  MISAEAP LFAK +EIF
Sbjct: 86  LAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIF 144

Query: 507 IHELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDFLIDIVPR 638
           I ELT+RAW H ++N+RRTLQR+DIA A+ KS+ +DFLIDI+ +
Sbjct: 145 IAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISK 188


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 28/89 (31%), Positives = 50/89 (56%)
 Frame = +3

Query: 372 KVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEEN 551
           K N   +     P+ARIKKIM+ D++V  ++   PV+ +KA E+F+  +   +   T  +
Sbjct: 13  KPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLH 72

Query: 552 KRRTLQRNDIATAILKSDQFDFLIDIVPR 638
           + + +  + +  A+   +QFDFL DIV +
Sbjct: 73  QAKRVTVSHLKHAVQSVEQFDFLQDIVEK 101


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 402 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 581
           A P+ R+ ++++     + + A APV  A   E    E+   A +   +NK+  +    +
Sbjct: 26  AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 582 ATAILKSDQFDFLI 623
             AI   ++ + L+
Sbjct: 86  QLAIRNDEELNKLL 99


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 402 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 581
           A P+ R+ ++++     + + A APV  A   E    E+   A +   +NK+  +    +
Sbjct: 26  AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 582 ATAILKSDQFDFLI 623
             AI   ++ + L+
Sbjct: 86  QLAIRNDEELNKLL 99


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 323 AANPPAVLGQSLRGHTKS*FRRL-QDPSFAVGSHQEDHETRRGSEDDIS 466
           + N P+++   LR +    F RL Q PS    S+  D +TRR S   I+
Sbjct: 220 SGNSPSLINH-LRQYLNQDFSRLHQSPSPIPNSNDNDSQTRRSSWSSIA 267


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 378 NSEDFKTQALPLARIKKIMKL 440
           N ++ K Q LPL  IKKI K+
Sbjct: 16  NLQEVKPQVLPLEEIKKIYKI 36


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 389 LQDPSFAVGSHQEDHETRRGSEDDISRGTGLIREGCRDF 505
           L++  F V    E HET+ G +  I    GLI +G  +F
Sbjct: 679 LKNLHFVVLPPTELHETKAGLQQIIIENGGLIHQGVGNF 717


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 632 HYVDQEIELIRFQYSCRYV 576
           HY D+  EL++    CRYV
Sbjct: 100 HYGDEAFELLKANEECRYV 118


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 662 RFRRLDFMPRHYVDQEIELIRFQYSCRYVVALQ 564
           +FRR  ++ +  V+Q +E I+F+    Y V +Q
Sbjct: 133 KFRRRHYIQQSAVNQALESIKFEVFREYPVHIQ 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,017
Number of Sequences: 5004
Number of extensions: 45255
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)