Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l16
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557...    31   1.0  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    28   5.4  
07_01_0998 - 8414492-8415175                                           28   5.4  
03_06_0728 + 35768830-35769324,35769404-35769462,35770440-357705...    28   7.1  

>11_08_0102 -
           28354880-28355056,28355159-28355376,28355634-28355712,
           28356451-28356519,28356602-28356681,28356818-28356925,
           28357103-28357169,28357894-28357959,28358042-28358119,
           28358198-28358250,28359542-28359575,28359851-28359865,
           28360082-28360109,28360628-28360716,28361688-28361810,
           28362192-28362296,28362381-28362485,28362924-28363139,
           28364656-28364845,28365193-28365418,28366096-28366162
          Length = 730

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 248 LSLLSRDESHCCSSPRYDIFLDFEN 322
           LSL++ DE+HCCS   +D   D++N
Sbjct: 227 LSLIAIDEAHCCSQWGHDFRPDYKN 251


>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 602 AWDSLHLPLGNPAIGAPPFEA*GSGCSSTVVYLRGVSQRAKHAP 471
           A+   H+P G  A+    F A   G  S   YL   ++ A++AP
Sbjct: 437 AFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP 480


>07_01_0998 - 8414492-8415175
          Length = 227

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 618 CCSRCCVGLIAPPTRE 571
           CC RCC G ++  TRE
Sbjct: 17  CCDRCCCGCVSYDTRE 32


>03_06_0728 +
           35768830-35769324,35769404-35769462,35770440-35770509,
           35770626-35770748,35770836-35770964,35771268-35771717
          Length = 441

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 VLLESEKILEEIQCYKGAGKEIREAIADPSRI 466
           V+ E  K+ EE+    GAG+E  EA  D S++
Sbjct: 94  VVGEKRKVPEEVAAAAGAGQEEEEAFDDESKL 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,746
Number of Sequences: 37544
Number of extensions: 355833
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)