Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17l16
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23452-11|AAK31548.1| 334|Caenorhabditis elegans Hypothetical p... 58 5e-09
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 31 0.91
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 29 2.1
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 29 2.1
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 29 2.1
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 29 2.8
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 29 2.8
AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical ... 29 3.7
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 4.9
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 4.9
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 4.9
AF067622-1|AAC17543.2| 366|Caenorhabditis elegans Hypothetical ... 28 6.4
U40410-4|AAA81393.1| 259|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 8.5
>U23452-11|AAK31548.1| 334|Caenorhabditis elegans Hypothetical
protein R07G3.8 protein.
Length = 334
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Frame = +2
Query: 299 DIFLDFENAAPTMTERDVYDDVQRVLLESEKILEEIQCY-KGAGKEIREAIADPSRISQE 475
+IF+DFENA PT ER++Y+ + VL + + +L ++ Y G E + D + +
Sbjct: 32 EIFVDFENAQPTDEEREIYNMAEEVLNDCDLVLADVSSYGNGCYAERNQLKNDSDTQALK 91
Query: 476 RAWRAVKPLVDKLLCCYNHSLKLQRVVPRLLGSLVGGAMSPTQHLEQQPS 625
++P V + Y H K++++VP +L L G + + L + S
Sbjct: 92 VLMTKLEPFVARTCSYYEHVAKIEKIVPIILWELSSGPLPLEEQLANKQS 141
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 350 VYDDVQRVLLESEKILEEIQCYKGAGKEI-REAIADPSRISQERAWRAVKPLVDK 511
+Y +QR++ + + L K G ++ RE ++D R ER W V +DK
Sbjct: 597 IYSKMQRLIEDKRQYLMVPSLGKDLGFQVVREWLSDKGRTLSERQWNTVSKALDK 651
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 398 EEIQCYKGAGKEIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLKLQRVVPRLLGSL 577
+ + Y G +++ + DPS + E A + + DKL N R RLL L
Sbjct: 314 KRVHMYDGLAEKLGATLPDPSTLHTEEA----REVFDKLCRDNNVDCSAPRTTARLLDKL 369
Query: 578 VGGAMSPT 601
VG + T
Sbjct: 370 VGEYLEST 377
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 398 EEIQCYKGAGKEIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLKLQRVVPRLLGSL 577
+ + Y G +++ + DPS + E A + + DKL N R RLL L
Sbjct: 396 KRVHMYDGLAEKLGATLPDPSTLHTEEA----REVFDKLCRDNNVDCSAPRTTARLLDKL 451
Query: 578 VGGAMSPT 601
VG + T
Sbjct: 452 VGEYLEST 459
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 398 EEIQCYKGAGKEIREAIADPSRISQERAWRAVKPLVDKLLCCYNHSLKLQRVVPRLLGSL 577
+ + Y G +++ + DPS + E A + + DKL N R RLL L
Sbjct: 372 KRVHMYDGLAEKLGATLPDPSTLHTEEA----REVFDKLCRDNNVDCSAPRTTARLLDKL 427
Query: 578 VGGAMSPT 601
VG + T
Sbjct: 428 VGEYLEST 435
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear receptor
NHR-115 protein.
Length = 391
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 194 FADENILTVKIFIKMGKLLSLLSRDESHCCSSPRY 298
F+D N+ + K FI + L+ +SR H C +P Y
Sbjct: 106 FSDSNVTSQKTFIDVQNLVFEVSRYLDHGCETPIY 140
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 115 protein.
Length = 391
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 194 FADENILTVKIFIKMGKLLSLLSRDESHCCSSPRY 298
F+D N+ + K FI + L+ +SR H C +P Y
Sbjct: 106 FSDSNVTSQKTFIDVQNLVFEVSRYLDHGCETPIY 140
>AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical
protein R02D3.1 protein.
Length = 934
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/85 (22%), Positives = 41/85 (48%)
Frame = +2
Query: 326 APTMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQERAWRAVKPLV 505
APT +R V ++ S + IQ Y AG +RE +++ I ++ + +
Sbjct: 49 APTHVKRLTKSGVNVLIQPSNRRAYPIQDYISAGAIVREDLSEAHIIMSVKSVPIDQLIP 108
Query: 506 DKLLCCYNHSLKLQRVVPRLLGSLV 580
+K ++H++K Q+ +L +++
Sbjct: 109 NKTYAFFSHTIKAQQDNMEMLDTIL 133
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 332 TMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQE 475
T +R + ++Q + + ++ L E YK A + ++AIAD +R+++E
Sbjct: 1733 TSAKRKLEGEIQAIHADLDETLNE---YKAAEERSKKAIADATRLAEE 1777
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 332 TMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQE 475
T +R + ++Q + + ++ L E YK A + ++AIAD +R+++E
Sbjct: 1733 TSAKRKLEGEIQAIHADLDETLNE---YKAAEERSKKAIADATRLAEE 1777
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +2
Query: 332 TMTERDVYDDVQRVLLESEKILEEIQCYKGAGKEIREAIADPSRISQE 475
T +R + ++Q + + ++ L E YK A + ++AIAD +R+++E
Sbjct: 1736 TSAKRKLEGEIQAIHADLDETLNE---YKAAEERSKKAIADATRLAEE 1780
>AF067622-1|AAC17543.2| 366|Caenorhabditis elegans Hypothetical
protein F33E11.2 protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 333 VGAAFSKSKNISYRGDEQQCDSSRDKRLNNFPIFINIFTVRIFSS 199
VGA ++ NISY G + C R+ NN+ I +IF + F +
Sbjct: 165 VGAPYNLVDNISYPGLIRFCGKVRNNLGNNYNIQCDIFQMCQFGA 209
>U40410-4|AAA81393.1| 259|Caenorhabditis elegans Hypothetical
protein C54G7.1 protein.
Length = 259
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 316 RECRAHNDRTRCLRRCPKSPVR 381
R CR +++ CL+RCP P +
Sbjct: 69 RACRRNDEYHSCLQRCPNVPAK 90
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 239 PFL*ISLRSEYSHPQNTLHGPKDRIF 162
PFL ISL SE+S P + H R F
Sbjct: 539 PFLNISLNSEHSSPVSFTHSMSSRTF 564
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,438,342
Number of Sequences: 27780
Number of extensions: 305460
Number of successful extensions: 771
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -