Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l16
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 419 LYNTVSLLISSRILTGLFGHRRKHRVRSL 333
           + NTVS+L++  I+   F   R HR+  L
Sbjct: 305 IMNTVSILVTVIIINWNFRGPRTHRMPQL 333


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 261 DKRLNNFPIFINIFTVRIFSS 199
           D RLN   +FI    V +FSS
Sbjct: 71  DTRLNKLAVFIVAGAVGVFSS 91


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 338 SLWARHSRNPRIYHIEATS 282
           SL+AR  +NPR  ++ ATS
Sbjct: 183 SLFARFLKNPRPCNVLATS 201


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 234 FINIFTVRIFSSAKYTAWPKRPY 166
           F++    R+F S +Y    K PY
Sbjct: 307 FLSSLAFRVFQSTQYIRHIKSPY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,992
Number of Sequences: 438
Number of extensions: 4054
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)