Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l11
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   1.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   5.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   5.4  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    23   7.1  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    23   7.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    22   9.4  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    22   9.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    22   9.4  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 87  YNKIVRAPIGEFCVKIFMHFYVFSH 13
           + +I  AP   F  K  +H+Y+F H
Sbjct: 225 FKEINNAPFPNFISKEILHYYLFIH 249


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 169 LQTTNFINTQGKIGQNN 119
           L  T+F N+QGK G+N+
Sbjct: 212 LNNTSFPNSQGKEGKNS 228


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = -1

Query: 48   VKIFMHFYVFSHAHF 4
            +++FM+FY FS++H+
Sbjct: 1729 LELFMNFYNFSNSHW 1743


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 81  KIVRAPIGEFCVKI 40
           K  R PIG+FC++I
Sbjct: 74  KQFRPPIGKFCIEI 87


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  SVAEYIEMHKNFNTKFADRCPND 78
           ++  Y E   NF TKF +  PN+
Sbjct: 328 NLCRYYEDFFNFQTKFLELFPNE 350


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 163 TTNFINTQGKIGQNNFHDYSN 101
           T  + N   +  QNNF DY N
Sbjct: 36  TIRWYNANFQAVQNNFSDYKN 56


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +3

Query: 129 PILPCVLIKF 158
           P+LPC+L++F
Sbjct: 146 PLLPCMLVRF 155


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 163 TTNFINTQGKIGQNNFHDYSN 101
           T  + N   +  QNNF DY N
Sbjct: 36  TIRWYNANFQAVQNNFSDYKN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,541
Number of Sequences: 5004
Number of extensions: 9557
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)