Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l11
         (177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186...    25   8.6  
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620...    25   8.6  
05_03_0596 - 16005622-16006122                                         25   8.6  
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482...    25   8.6  

>12_02_1040 +
           25616967-25617276,25618042-25618163,25618397-25618623,
           25618708-25618885,25619054-25619197,25619448-25619669
          Length = 400

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 1   SEVSVAEYIE--MHKNFNTKFADRCPNDFIVINSKSWN 108
           S++S A++    +HKN   +  D CP+    I  + W+
Sbjct: 313 SDLSFADFSSFVVHKNLRPEIPDCCPSAMASIMRRCWD 350


>08_01_0701 +
           6200351-6200470,6200879-6201104,6201502-6201747,
           6201818-6201868,6202231-6202491,6202587-6202639,
           6202705-6202819,6202985-6203239,6203773-6204827
          Length = 793

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 128 PYFTLCINKV 157
           PYFT CINKV
Sbjct: 485 PYFTACINKV 494


>05_03_0596 - 16005622-16006122
          Length = 166

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 67  CPNDFIVINSKSWNNHENC 123
           CPND I+  S+ + N E C
Sbjct: 142 CPNDCILYRSEEYENLEAC 160


>02_02_0455 +
           10445417-10446931,10447370-10447903,10448198-10448278,
           10448699-10448770,10449643-10449669
          Length = 742

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 52  KFADRCPNDFIVINSKSWNNHENCSALFYP 141
           +  D  P  + +I+   W +HE+C A   P
Sbjct: 55  RLKDTLPAMYDLIDRAEWRSHEDCVAKLLP 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,841,058
Number of Sequences: 37544
Number of extensions: 47917
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)