Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l04
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    79   6e-17
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    79   6e-17
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   1.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   1.4  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    23   5.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    23   5.6  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    23   7.4  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   7.4  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    22   9.7  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    22   9.7  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 79.4 bits (187), Expect = 6e-17
 Identities = 37/54 (68%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   PRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 160
           PRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 77  PRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 79.4 bits (187), Expect = 6e-17
 Identities = 37/54 (68%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   PRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 160
           PRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 77  PRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 54  PHDSLVT*SLQQVVASWTMKKPEENTLEEK 143
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  FGYLVLTTSGGIMDHEEARRKHLGGKIL 148
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 77  VLTTSGGIMDHEEARRKHLGGKIL 148
           ++ T  GIM  ++A + +LGG ++
Sbjct: 125 IVETKHGIMSIDDAIKNNLGGNVI 148


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 14  VPIND-IERWTNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILG 151
           +  ND IE+  ++L S     L +T+   I+     RRK L  KI+G
Sbjct: 188 IEANDLIEKIFSILFSDSLNVLYITSVLNILPVLVKRRKELAPKIIG 234


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 23  NDIERWTNLLP 55
           +DI+RW N+LP
Sbjct: 404 SDIQRWQNVLP 414


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 21  STILKDGLICSP 56
           ST  KDG++CSP
Sbjct: 92  STSSKDGVVCSP 103


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 67  WLPSPYNKWWHH 102
           W+P    KWW H
Sbjct: 218 WIPFHPGKWWCH 229


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 15  FPSTILKDGLIC 50
           FPS +++DG +C
Sbjct: 258 FPSNLVRDGAVC 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,140
Number of Sequences: 5004
Number of extensions: 13105
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)