Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l04
         (198 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823           93   3e-20
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...    82   5e-17
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           61   1e-10
12_02_0312 + 17395716-17398112                                         26   3.7  
04_04_1420 + 33441260-33443704                                         26   3.7  
03_06_0497 - 34332310-34334415                                         25   8.5  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 41/54 (75%), Positives = 48/54 (88%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   PRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 160
           PRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 77  PRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 38/50 (76%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2   PRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 148
           PRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 77  PRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 24/52 (46%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +2

Query: 5   RFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 157
           R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++LG+F
Sbjct: 77  RQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  INDIERWTNLLPSRQFGYLVLTTS 91
           IND E   NLLPS + G ++L T+
Sbjct: 280 INDWEELMNLLPSGRSGSMILITT 303


>04_04_1420 + 33441260-33443704
          Length = 814

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 55  LTTVWLPSPYNKWW 96
           +++ + PSP+NKWW
Sbjct: 202 ISSNYWPSPFNKWW 215


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 27  ILKDGLICSPHDSLVT*SLQQVVASWTMKKPEENTLEEKF*ASFSKF 167
           +LK GL+CS  D     S++QVV       P   TL E       +F
Sbjct: 608 VLKLGLLCSHPDPRRRPSMRQVVQILEGAAPAPETLPEDLECGVGQF 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,401,129
Number of Sequences: 37544
Number of extensions: 89116
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)