Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l04
         (198 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...    97   2e-21
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   2.4  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   2.4  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    25   9.8  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/54 (79%), Positives = 50/54 (92%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2   PRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 160
           PR ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 77  PRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
          protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +1

Query: 58 TTVWL-PSPYNKWW 96
          T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 133 KVFSSGFFMVHDATTCCK 80
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 133 KVFSSGFFMVHDATTCCK 80
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 63   SLVT*SLQQVVASWTMKKPEENTLEEKF*ASFSKF 167
            S V+  L +V    T KKPE +  +EK     ++F
Sbjct: 1233 SAVSIDLDKVFVQGTAKKPENDEFDEKIKRGIAEF 1267


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 63   SLVT*SLQQVVASWTMKKPEENTLEEKF*ASFSKF 167
            S V+  L +V    T KKPE +  +EK     ++F
Sbjct: 1233 SAVSIDLDKVFVQGTAKKPENDEFDEKIKRGIAEF 1267


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 106 P*RSQKKTPWRKNFRLLFLSLLNTRQN 186
           P   +KKTPW     L  L +LNT+ N
Sbjct: 207 PCEFEKKTPWYSEGLLDELEVLNTKIN 233


>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 145 NFSSKVFSSGFFMVHDATTCC 83
           N   KV++ G+ M  D  +CC
Sbjct: 148 NVREKVYADGYIMSFDKKSCC 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,613,122
Number of Sequences: 27780
Number of extensions: 73649
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)