Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17l04
         (198 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   2.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   5.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           19   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   7.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           19   7.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   7.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    18   9.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    18   9.9  

>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  ILKDGLICSPHDSL 68
           +L DGL+C   DS+
Sbjct: 70  LLSDGLMCVEKDSI 83


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +1

Query: 79  PYNKWWHHGP*RSQKKTPWRKNFRL 153
           P + W          KTPW K +++
Sbjct: 192 PISGWHGDNMLEPSPKTPWYKGWKV 216


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 126 FLLASSWSMMPPLVV 82
           + LASSW  + PL +
Sbjct: 434 YSLASSWPALVPLAL 448


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 78  SLQQVVASWTMKKPE 122
           S++  +  WT ++PE
Sbjct: 479 SIRGAIQQWTCRQPE 493


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 139 SSKVFSSGFFMVHDATTC 86
           S  VFS G F++ D   C
Sbjct: 597 SLMVFSLGLFLLLDMFNC 614


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 40 PSFNIVDGNIKTR 2
          P+F +V  N+K R
Sbjct: 2  PNFRVVGDNLKDR 14


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 52  EQISPSFNIVDG 17
           E + P FN+ DG
Sbjct: 440 EILCPHFNVTDG 451


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 40 PSFNIVDGNIKTR 2
          P+F +V  N+K R
Sbjct: 3  PNFRVVGDNLKDR 15


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 52  PLTTVWLPSPYNKWWHH 102
           P T  +LP  Y+   HH
Sbjct: 306 PSTAGFLPPSYHPHQHH 322


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 138 PPRCFLLASSWSMMPPL 88
           P    L+ ++W   PPL
Sbjct: 31  PDMLHLIDANWYQYPPL 47


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 36  DGLICSPHDSLVT*SLQQVVASWTMKKP 119
           D  ICS     ++ + Q +V  W M  P
Sbjct: 142 DTQICSMMIESLSHTTQDLVFIWNMTDP 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,726
Number of Sequences: 438
Number of extensions: 850
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)