Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k22
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 139 3e-34
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 32 0.083
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 28 1.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 1.8
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 1.8
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 2.3
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 3.1
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 27 3.1
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 27 3.1
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 4.1
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.1
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 5.4
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 26 5.4
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch... 25 7.2
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 25 9.5
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 9.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.5
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.5
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 9.5
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 139 bits (337), Expect = 3e-34
Identities = 79/186 (42%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Frame = +1
Query: 118 KNKESLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLS 297
KN+ LGRA+ D F+KNR + + H + + R L+SVT E+ L EFL+
Sbjct: 7 KNQIGLGRAIQSD-FTKNRRNRK---GGLKHIVDSDPKAH--RAALRSVTHETDLDEFLN 60
Query: 298 TAELAQREFTAEKLNLKYVKSVPSEVAIVTS---------QPDFDEPLTVPRRPQWNPGV 450
TAEL + EF AEK N+ +++ +++ Q + LT+PRRP W+
Sbjct: 61 TAELGEVEFIAEKQNVTVIQNPEQNPFLLSKEEAARSKQKQEKNKDRLTIPRRPHWDQTT 120
Query: 451 TAEEQLNRERETFLDWRRHLNELQAKLGAAVTPYERNLELWKQLWRTLEKSDIVLILLDA 630
TA E ERE+FL+WRR+L +LQ G VTP+ERNLE+W+QLWR +E+SD+V+ ++DA
Sbjct: 121 TAVELDRMERESFLNWRRNLAQLQDVEGFIVTPFERNLEIWRQLWRVIERSDVVVQIVDA 180
Query: 631 RNPLLF 648
RNPL F
Sbjct: 181 RNPLFF 186
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 31.9 bits (69), Expect = 0.083
Identities = 9/25 (36%), Positives = 21/25 (84%)
Frame = +1
Query: 568 LWKQLWRTLEKSDIVLILLDARNPL 642
+W +L++ ++ SD+++ +LDAR+P+
Sbjct: 206 IWNELYKVIDSSDVLIQVLDARDPV 230
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 644 NKGFLASNNINTISDFSKVLH 582
N+ L NINTI+DFS++ H
Sbjct: 289 NENLLEFRNINTITDFSQISH 309
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 258 LEIQTSPIISIIHLCSVEHGIVFDMFFVAIFRESIFDEGSPKRLFILLAHYLNLHYKTGR 79
L T+P+ II S +G+++ V E + GSPK L +++ R
Sbjct: 176 LTFDTTPLFPIIKYDSENNGLMYKPMIVLHSNEFLLITGSPKDAIGL---FVDSQGNVTR 232
Query: 78 NTTSFNFSNK 49
+T +F+F K
Sbjct: 233 STLTFSFYPK 242
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 574 KQLWRTLEKSDIVLILLDARNP 639
K+ + +E SD++L +LDAR+P
Sbjct: 154 KEFKKVVEASDVILYVLDARDP 175
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Frame = -1
Query: 185 CFLLRFL----ENLSLMRALPRDSLFFLPIILT 99
CF LRF+ ++ SL R+LPR L L I+L+
Sbjct: 439 CFALRFILHNYKDFSLPRSLPRPFLLALSILLS 471
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = -1
Query: 374 TSLGTDFTYFRLSFSAVNSLCASSAVERNSWSEDSAVTDWRFKRPQSYPSFTSVVWSMVL 195
T L D T ++ LCASS + ++SED W R SF S S +
Sbjct: 95 TQLSEDITQLSWGYNFDLLLCASSYTKLINFSEDKPRLVWSQNRISD--SFLS---STIS 149
Query: 194 SSTCFL 177
S CF+
Sbjct: 150 SDACFI 155
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 249 ESPVSDCGVFTPRISLHS*TGTERVHC 329
ESP+ D G P + L S T E + C
Sbjct: 326 ESPIIDAGFLRPLVDLLSCTENEEIQC 352
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/67 (19%), Positives = 30/67 (44%)
Frame = +1
Query: 157 RFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAELAQREFTAEK 336
R+ +N + + + ++ EV + W R + A + Q +L+ + +EF E+
Sbjct: 183 RYHENERARGIYERFVVVHPEVTNWLRWARFEEECGNAANVRQVYLAAIDALGQEFLNER 242
Query: 337 LNLKYVK 357
+ + K
Sbjct: 243 FFIAFAK 249
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 439 NPGVTAEEQLNRERETFLDWRRHLNELQAKLGAAVTPYERNLE 567
NP +T E++L+R R +W + NE+ + L A + ++ E
Sbjct: 1396 NP-LTKEKKLDRARRQVSEWTSYDNEIASVLQTASSQSDKEFE 1437
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 457 EEQLNRERETFLDWRRHLNELQAKLGAAVTPYERNLELWKQLWRTLEKSDIVLILLDARN 636
E++ NR +L RR L + A + + LW QLWR L + + ++ A +
Sbjct: 334 EDEANRYVPRWLT-RRFLMDEPGMSSFAHALLQPDHNLWMQLWRILPPNTLSTLVNTASS 392
Query: 637 PL 642
P+
Sbjct: 393 PI 394
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 415 TVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQAKL 531
+VP R +W+P A + + + T +W RHLN L L
Sbjct: 34 SVPER-KWDP--KAPKHIQEQPWTMQNWWRHLNWLHCML 69
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 163 SKNRNKKHVEDNTMLHTTEVNDGYDWGR-LN--LQSVTAESSLQEFLSTAELAQRE 321
S + +KH + L T+ + +DW L+ Q V + +L EF ++ + ++ E
Sbjct: 87 SDKKRRKHYDKTGQLRETDADIDFDWKEWLDELYQGVVSGETLNEFKASYQYSEEE 142
>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 571 WKQLWRTLEKSDIVLILLDAR 633
WK +W+++ KS I+++L R
Sbjct: 107 WKMVWQSVPKSGIIVMLTKLR 127
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 638 GFLASNNINTISDFSKV 588
G +A NN +TI+DFSK+
Sbjct: 167 GGIALNNFSTINDFSKL 183
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 149 SKIDSLKIATKNMSKTIPCSTLQR*MMDMIGDV 247
S+ DS +A K++ + PC T ++D GDV
Sbjct: 270 SRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDV 302
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -3
Query: 249 QTSPIISIIHLCSVEHGIVFDMFFVAIFRESIFDEGSPKRLFILLAHY 106
Q +P+++ + C + IVF + FV + + + + G+ + L L H+
Sbjct: 1383 QLNPVVNWLKRCIISIFIVFFISFVPLTVQELTERGAWRALTRLGKHF 1430
>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 77 IQLPLTFLIKYKQFE*NT-WN 18
I LP+ FLI Y F NT WN
Sbjct: 61 INLPIRFLIFYNAFRSNTSWN 81
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 448 VTAEEQLNRERETFLDWRRHLNELQAKLGAAVTPYERN 561
V EQL R RET R + +LQ PY+R+
Sbjct: 435 VNTREQLRRRRETLNRKRITIAKLQNNHSQITFPYKRH 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,337
Number of Sequences: 5004
Number of extensions: 57140
Number of successful extensions: 204
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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