Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k22
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 95 3e-20
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 94 8e-20
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 32 0.34
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 31 0.60
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 31 0.80
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 1.8
02_04_0304 + 21860661-21860784,21861435-21862044,21862557-218627... 29 2.4
11_04_0112 - 13585293-13585988,13586095-13586619 29 4.2
07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337... 29 4.2
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 29 4.2
09_02_0175 + 5346738-5346941,5347225-5347491 28 5.6
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 28 5.6
01_06_1229 + 35551522-35552169 28 5.6
12_02_0896 + 24100015-24100240,24100910-24101277,24102144-241023... 28 7.4
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 7.4
09_02_0208 - 5802370-5802963 27 9.8
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 27 9.8
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 27 9.8
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 95.5 bits (227), Expect = 3e-20
Identities = 37/79 (46%), Positives = 58/79 (73%)
Frame = +1
Query: 412 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQAKLGAAVTPYERNLELWKQLWRT 591
L VPRRP W P +T EE E+ FL+WRR+L L+ +TP+E+N+++W+QLWR
Sbjct: 127 LKVPRRPPWTPQMTVEELDANEKRAFLEWRRNLARLEENEKLVLTPFEKNIDIWRQLWRV 186
Query: 592 LEKSDIVLILLDARNPLLF 648
LE+SD++++++DAR+PL +
Sbjct: 187 LERSDLLVMVVDARDPLFY 205
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 94.3 bits (224), Expect = 8e-20
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = +1
Query: 412 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQAKLGAAVTPYERNLELWKQLWRT 591
L VPRRP WN +T EE ER FL WRR+L L+ +TP+E+N+++W+QLWR
Sbjct: 110 LRVPRRPPWNSRMTVEELDENERRAFLVWRRNLARLEENDKLVLTPFEKNIDIWRQLWRV 169
Query: 592 LEKSDIVLILLDARNPLLF 648
LE+SD++++++DAR+PL +
Sbjct: 170 LERSDLLVMVVDARDPLFY 188
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 32.3 bits (70), Expect = 0.34
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +1
Query: 568 LWKQLWRTLEKSDIVLILLDARNPL 642
+W +L++ ++ SD+V+ +LDAR+P+
Sbjct: 212 IWGELYKVIDSSDVVVQVLDARDPM 236
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 238 WGRLNLQSVT-AESSLQEFLSTAELAQREFTAEKLNLKYVKSVPSEVAIVTSQ-PDFDEP 411
+GRLNL + +ESS E LST + AQR + N K + +V + Q D +
Sbjct: 371 FGRLNLVDLAGSESSSSETLSTLKFAQRAKLIQN-NAKVNEDASGDVMSLQRQIEDLKDQ 429
Query: 412 LTVPRRPQWNPG 447
LT ++ Q PG
Sbjct: 430 LTCLKKQQNMPG 441
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 571 WKQLWRTLEKSDIVLILLDARNPL 642
+K+L + +E SD++L +LDAR+PL
Sbjct: 142 YKELVKVIEASDVILEVLDARDPL 165
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 118 KNKESLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLS 297
+ KES R KD+ KN++ V N E + Y + +S T SS+++ +
Sbjct: 62 QKKESKSRKSTKDKSKKNKDMTQVPTN----AEEFHKEYTTKVIRKESRTDSSSIEQVIG 117
Query: 298 TAELAQREFTAEKLNLK 348
T+ + + E T E++ K
Sbjct: 118 TSSIQEME-TNEQVKSK 133
>02_04_0304 +
21860661-21860784,21861435-21862044,21862557-21862771,
21863072-21863192,21863660-21863772,21863877-21864106,
21864428-21864543,21864675-21864773,21865394-21865639,
21866091-21866190,21866280-21866486,21866584-21866805
Length = 800
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 172 RNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAELAQREFTAEKLNLKY 351
R H T+LH+ E + DW RL LQ SL + + A E T +K L+Y
Sbjct: 248 REALHARPTTLLHSLEGMENLDWERL-LQFKCPAGSLHSSPAASAYALSE-TGDKELLEY 305
Query: 352 VKS 360
+++
Sbjct: 306 LET 308
>11_04_0112 - 13585293-13585988,13586095-13586619
Length = 406
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -1
Query: 239 QSYPSFTSVVWSMVLSSTCFLLRFL--------ENLSLMRALPR---DSLFFLPIILTYT 93
+S+PSF + S+ LS C LL F +N S+ A R L+ L ++LT
Sbjct: 283 RSWPSFIIAMHSLWLSLICMLLAFFISIIAVMDKNNSIRIAPTRVMYHGLYILMMMLTKA 342
Query: 92 TKQGEIQLPLTFLI 51
T G ++ L FLI
Sbjct: 343 TMPGSVKGILMFLI 356
>07_03_1673 -
28532923-28533009,28533058-28533117,28533664-28533732,
28534757-28534862,28535058-28535203,28535805-28536017,
28536523-28536546,28536647-28536704,28536739-28537022,
28538890-28539063,28539427-28539825
Length = 539
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 493 DWRRHLN-ELQAKLGAAVTPYERNLELWKQLWRTLEKSDIV 612
DW +N E+ L T N+E+WK L+K D+V
Sbjct: 215 DWFSQMNSEISGNLNKMRTVGRYNIEMWKATGMALDKVDLV 255
>03_05_0167 -
21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -1
Query: 350 YFRLSFSA-VNSLCASSAVERNSWSEDSAVTDWRFKRPQSY 231
YF + F+ V+S+C++ +++++SE+ + +DW RP+ Y
Sbjct: 355 YFLICFAVYVHSVCSA---QQSNFSEEVSFSDWMRARPELY 392
>09_02_0175 + 5346738-5346941,5347225-5347491
Length = 156
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 205 LHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAELAQREFTAEKLNLKYVKSVPSEVAIV 384
LH+ + + W R+ L + SSL F+ L QR +L L V P +++V
Sbjct: 75 LHSDSLGEALAWWRVVLTTEKDLSSLSPFVPPTILRQRLGAYAQLFLVGVGGAPIALSLV 134
Query: 385 TSQP 396
QP
Sbjct: 135 QWQP 138
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +1
Query: 118 KNKESLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLQEFLS 297
+ KES R KD+ KN++ V N E + Y + +S T SS+++ +
Sbjct: 62 QKKESKSRKSTKDKSKKNKDMTQVSAN----AEEFHKEYTTKVIRKESRTDSSSIEQVIG 117
Query: 298 TAELAQREFTAEKLNLK 348
++ + + E T E++ K
Sbjct: 118 SSSIQEME-TNEQVKSK 133
>01_06_1229 + 35551522-35552169
Length = 215
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 616 SIQYQIFLKSSITASKVPSFSHKVSLLHQA*LEVHSNADANLRMFLSH 473
+I Y FLK+ +T + H+ H S ADA+L + L+H
Sbjct: 82 AIHYVKFLKAQVTLHQAALVQHEEGCQHADVAAAFSAADADLALELNH 129
>12_02_0896 +
24100015-24100240,24100910-24101277,24102144-24102380,
24102461-24102754
Length = 374
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +1
Query: 106 IMGKKNKESLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDG----YDWGRLNLQSVTAE 273
++G++ + GR ++ +R S + N E L +D Y G ++ +
Sbjct: 142 VLGRRGPD--GREVVAERLSNDHNVAEEEVRKELTEQHPDDSRIVIYTRGVWRIKGIIQV 199
Query: 274 SSLQEFLSTAELAQREFTAEKLNLKYVKSVPSEVAIVTSQPDFDE 408
S + L + EF + + +YV S+P + ++T++P E
Sbjct: 200 S---RSIGDVYLKKPEFARDPIFRQYVCSIPLKRPVMTAEPSIKE 241
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +1
Query: 448 VTAEEQLNRERETFLDWRRHLNELQAKLGAAVTPYERNLELWKQLWRTLE 597
V A +LN E E + LNELQ L AAV E + E L +TL+
Sbjct: 1444 VIANSKLNEELELH---QNKLNELQVALAAAVAEKEGSSEEIHSLRKTLD 1490
>09_02_0208 - 5802370-5802963
Length = 197
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 364 PSEVAIVTSQPDFDEPLTVPRRPQWNPGVTAEEQLNRERETFLDW 498
PSE+A +P FD L WN + AEEQL R +L W
Sbjct: 99 PSEIAGGGVEP-FDAELAY-YDSSWNTMIPAEEQLLRPITGYLSW 141
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1
Query: 166 KNRNKKHVEDNTMLHTTEVN-DGYDWGRLNLQSVTAE--SSLQEFLSTAE--LAQREFTA 330
KN +K VE+ +L + +V D ++ VT+ S L+ + E + Q+E
Sbjct: 694 KNLKRKRVEEERLLESKKVQLDDIRKTSADINRVTSSDTSELEAEMMQVEVDIEQKELLV 753
Query: 331 EKLNLKYVKSVPSE 372
+K NL+ K++ E
Sbjct: 754 QKTNLRLTKALQDE 767
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 496 WRRHLNELQAKLGAAVTPYERNLELWKQLWRTLEKSDIVLILLDARNPL 642
WRR + A G+ V + + + TLEK + LIL DA +PL
Sbjct: 140 WRRRRCDQAAYTGSLVEAATTQSTIPELIATTLEKCKLSLILQDAIDPL 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,574
Number of Sequences: 37544
Number of extensions: 333962
Number of successful extensions: 1011
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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