Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k22
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.48 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.48 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.84 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -1

Query: 338 SFSAVNSLCASSAVERNSWSEDSAVTDW------RFKRPQSYPSFTSVVWSMVLSSTCFL 177
           S+ A+N L  S  +E+ SW+   A++        RF  PQS       + SM+  +TC+ 
Sbjct: 310 SWVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRFP-PQSLTDMWLTMLSMISGATCYA 368

Query: 176 LRFLENLSLMRAL 138
           L      +L+++L
Sbjct: 369 LFLGHATNLIQSL 381


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -1

Query: 338 SFSAVNSLCASSAVERNSWSEDSAVTDW------RFKRPQSYPSFTSVVWSMVLSSTCFL 177
           S+ A+N L  S  +E+ SW+   A++        RF  PQS       + SM+  +TC+ 
Sbjct: 278 SWVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRFP-PQSLTDMWLTMLSMISGATCYA 336

Query: 176 LRFLENLSLMRAL 138
           L      +L+++L
Sbjct: 337 LFLGHATNLIQSL 349


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 105 LNLHYKTGRNTTSFNFSNKV*TVRIEHMEWISF 7
           L+L +K  RN   F F   + ++ I  + W+SF
Sbjct: 231 LSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSF 263


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 628 HLTISIQYQIFLKSSITASKVPSFSHKV 545
           HL+  +++ + LK ++++    SF+H V
Sbjct: 866 HLSTLVEFALELKKALSSINEQSFNHFV 893


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 296  ERNSWSEDSAVTDWRFKRPQSYPSFTSVVWSMVLSSTCFLLRFLENL 156
            E N  S+   +  WR + P+S   +   + S ++ S   LL + E +
Sbjct: 1215 ESNVESKGRLLGFWRVEMPRSNADYEVCIGSQIMVSPETLLSYDEKM 1261


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 626 SNNINTISDFSKVLHNCFQSSKFLS*GVTAAPSLA*SSFKC 504
           +NN  T +DFS  + N   SSK    GV    S    + KC
Sbjct: 202 NNNDATPTDFSMGVKNNHVSSKVEGNGVHEENSPLEDNIKC 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,445
Number of Sequences: 438
Number of extensions: 3272
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)