Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k21
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.4  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 602 IFTITTPSVWVKSCIF*SNPKMCINHQTAKK 694
           I+ + +PS+     I+ +NP +C+ +  AKK
Sbjct: 210 IYFLHSPSIIALGAIYHTNPTICLQYIEAKK 240


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 511 YRKRFILNCYIANVVSCTKCENR 579
           Y K F+L+CY  ++    +C  R
Sbjct: 17  YSKTFLLSCYCVSIYRLEECSGR 39


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 193  KATYLIDPDDFIDKLTLTPYTVFYNGGVLVKISGLRLYMLLTA 321
            KA   IDPD+F   +  T    F+     +K+  ++LY +  A
Sbjct: 2124 KANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEA 2166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,448
Number of Sequences: 5004
Number of extensions: 68412
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)