Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k19
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 56 6e-09
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 27 1.8
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.4
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 27 3.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 4.1
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.5
SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s... 26 5.5
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 7.2
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 25 9.5
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 55.6 bits (128), Expect = 6e-09
Identities = 23/68 (33%), Positives = 45/68 (66%)
Frame = +1
Query: 451 VIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKD 630
++PP+WM++ LENI+++E + F+++P ++ A L+L A+D+ + +I+ I+ D
Sbjct: 70 IVPPEWMEIGKLENIRDDELENETFSELP-FRWLETAHLLLNFCADDIEDVEDIRRILLD 128
Query: 631 IWDIRMSK 654
I + R SK
Sbjct: 129 IREARQSK 136
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 445 CHVIPPDWMDVEVLENIKEEEKRSRFFT 528
C +P DW+ E + +KE++K + F+
Sbjct: 221 CSFVPKDWVRDEFFDTLKEKKKSCKGFS 248
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 450 MALLFLYHVFIYHIFLGILYYDLVTKTFKSCLIL-IYTLI 334
++LL F Y +F I Y L+ T+K CL+ I TL+
Sbjct: 41 VSLLVWNFYFGYRVFYRISKYSLIDLTYKLCLLCGIVTLL 80
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 580 AAEDVPNAPEIKTIIKDIWDIRMSK 654
+A DVP+A + +++KD+ D+ MSK
Sbjct: 368 SATDVPSAEHVDSVLKDV-DVIMSK 391
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/70 (20%), Positives = 33/70 (47%)
Frame = -1
Query: 567 QFGFHHIVFIWHLCEESGTLFLFFNILQNFHVHPVRRDNMALLFLYHVFIYHIFLGILYY 388
+F H F++ E + L + + + + D + +LF +H ++ + ++
Sbjct: 562 RFKEDHFSFMFKKEENYAIITLSLVKIASTPMSKLYEDYLVMLFAFHYSMFQVMTKLIAD 621
Query: 387 DLVTKTFKSC 358
+LV +F+SC
Sbjct: 622 NLVHFSFQSC 631
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 567 DTWFSCRRCSQCTRNKDYYQRHLGYK 644
+TW S RC+ C D LG+K
Sbjct: 340 NTWISTIRCNDCNSRCDTKYHFLGHK 365
>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 71
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 108 LISVKVQKCGKMKQSRWTSLLGILQKSN 191
+I ++ CGK+ +W + L +LQ+ N
Sbjct: 2 IIPIRCFSCGKVIGDKWDTYLTLLQEDN 29
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 445 CHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYM----VEAKLILGSAAEDVPNAPEI 612
C +P D E+ E + E+ F+TK +E+Y+ +A LIL S E + ++ +
Sbjct: 30 CSSLPSD--ATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILILKSGLETLKDSESL 87
Query: 613 KTIIKDIWDIRMS 651
+ +I I +S
Sbjct: 88 CILNANIAAIYLS 100
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 621 NSLYFWCIGNIFGS*TKYQFGFHHIV-FIWHLCEESGTLFLFFNILQNFHVHPVRRDNMA 445
N + CI + T ++G ++I+ ++ L + L N+L+ V V +++
Sbjct: 167 NRAFTICINDRAPLSTSRKWGAYYIMGLLFKLYLRLDCVHLTNNVLRAMKV--VELPDIS 224
Query: 444 LLFLYHVFIYHIFLGILYY 388
L HV I+H +LGI+ +
Sbjct: 225 LFPKSHVVIFHYYLGIVAF 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,749
Number of Sequences: 5004
Number of extensions: 52745
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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