Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k19
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457186-1|CAG33467.1| 185|Homo sapiens Pfs2 protein. 91 4e-18
BC062444-1|AAH62444.1| 185|Homo sapiens GINS complex subunit 2 ... 91 4e-18
BC010164-1|AAH10164.1| 185|Homo sapiens GINS complex subunit 2 ... 91 4e-18
BC003186-1|AAH03186.1| 185|Homo sapiens GINS complex subunit 2 ... 91 4e-18
AK223123-1|BAD96843.1| 185|Homo sapiens DNA replication complex... 91 4e-18
AK001275-1|BAA91595.1| 185|Homo sapiens protein ( Homo sapiens ... 91 4e-18
AF201939-1|AAF86875.1| 185|Homo sapiens DC5 protein. 91 4e-18
AF151880-1|AAD34117.1| 185|Homo sapiens CGI-122 protein protein. 91 4e-18
DQ106402-1|AAZ99231.1| 334|Homo sapiens G-protein-coupled recep... 33 1.2
DQ106401-1|AAZ99230.1| 381|Homo sapiens G-protein-coupled recep... 33 1.2
DQ106400-1|AAZ99229.1| 349|Homo sapiens G-protein-coupled recep... 33 1.2
DQ106399-1|AAZ99228.1| 349|Homo sapiens G-protein-coupled recep... 33 1.2
DQ106398-1|AAZ99227.1| 381|Homo sapiens G-protein-coupled recep... 33 1.2
BC020678-1|AAH20678.1| 381|Homo sapiens G protein-coupled recep... 33 1.2
AL627402-7|CAH71242.1| 381|Homo sapiens G protein-coupled recep... 33 1.2
AK027780-1|BAB55362.1| 381|Homo sapiens protein ( Homo sapiens ... 33 1.2
AF118670-1|AAD17248.1| 381|Homo sapiens orphan G protein-couple... 33 1.2
AF039686-1|AAD50531.1| 381|Homo sapiens G-protein coupled recep... 33 1.2
>CR457186-1|CAG33467.1| 185|Homo sapiens Pfs2 protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>BC062444-1|AAH62444.1| 185|Homo sapiens GINS complex subunit 2
(Psf2 homolog) protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>BC010164-1|AAH10164.1| 185|Homo sapiens GINS complex subunit 2
(Psf2 homolog) protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>BC003186-1|AAH03186.1| 185|Homo sapiens GINS complex subunit 2
(Psf2 homolog) protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>AK223123-1|BAD96843.1| 185|Homo sapiens DNA replication complex
GINS protein PSF2 variant protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>AK001275-1|BAA91595.1| 185|Homo sapiens protein ( Homo sapiens
cDNA FLJ10413 fis, clone NT2RP1000063. ).
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>AF201939-1|AAF86875.1| 185|Homo sapiens DC5 protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>AF151880-1|AAD34117.1| 185|Homo sapiens CGI-122 protein protein.
Length = 185
Score = 90.6 bits (215), Expect = 4e-18
Identities = 34/72 (47%), Positives = 55/72 (76%)
Frame = +1
Query: 439 QKCHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKT 618
QKC ++PP+WMDVE LE +++ E++ FT MP+ +YM KL+L A++++P A EI+T
Sbjct: 56 QKCRLLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRT 115
Query: 619 IIKDIWDIRMSK 654
++KD+WD R++K
Sbjct: 116 LVKDMWDTRIAK 127
>DQ106402-1|AAZ99231.1| 334|Homo sapiens G-protein-coupled receptor
34 splice variant protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 186 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 245
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 246 QL-NVS---SCYWKEIVHKTNEI 264
>DQ106401-1|AAZ99230.1| 381|Homo sapiens G-protein-coupled receptor
34 protein.
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
>DQ106400-1|AAZ99229.1| 349|Homo sapiens G-protein-coupled receptor
34 splice variant protein.
Length = 349
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 201 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 260
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 261 QL-NVS---SCYWKEIVHKTNEI 279
>DQ106399-1|AAZ99228.1| 349|Homo sapiens G-protein-coupled receptor
34 splice variant protein.
Length = 349
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 201 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 260
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 261 QL-NVS---SCYWKEIVHKTNEI 279
>DQ106398-1|AAZ99227.1| 381|Homo sapiens G-protein-coupled receptor
34 protein.
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
>BC020678-1|AAH20678.1| 381|Homo sapiens G protein-coupled receptor
34 protein.
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
>AL627402-7|CAH71242.1| 381|Homo sapiens G protein-coupled receptor
34 protein.
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
>AK027780-1|BAB55362.1| 381|Homo sapiens protein ( Homo sapiens
cDNA FLJ14874 fis, clone PLACE1002722, weakly similar to
PROBABLE G PROTEIN-COUPLED RECEPTOR KIAA0001. ).
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
>AF118670-1|AAD17248.1| 381|Homo sapiens orphan G protein-coupled
receptor protein.
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
>AF039686-1|AAD50531.1| 381|Homo sapiens G-protein coupled receptor
GPR34 protein.
Length = 381
Score = 32.7 bits (71), Expect = 1.2
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 97 LLTV*YL*KCKNVGK*NKAAGRHFSGSSKSPTKKSQ*MTTILLRL*FIPYHLISFHLISS 276
L+ + Y+ KN+ + +K + + + T ++ + I+ + F+PYH F ISS
Sbjct: 233 LIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISS 292
Query: 277 QLINVSN*LSSFHFIIFHKNKSI 345
QL NVS S + I HK I
Sbjct: 293 QL-NVS---SCYWKEIVHKTNEI 311
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,129,639
Number of Sequences: 237096
Number of extensions: 1870542
Number of successful extensions: 8070
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8069
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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