Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k13
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    32   0.073
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    29   0.51 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.68 
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    29   0.90 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    26   4.8  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.3  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   6.3  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.073
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 215 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 394
           D D SL +  V N+ +ND+I N+          +  +LS    D        +   TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254

Query: 395 HRFVDDNVLTQDE 433
           ++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 215 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 382
           D D +  L R+  +F+ND  +  + +K     + S    R+ V  L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 278 NDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 457
           +D++    +T D  N+ ++  + F I ALL    +    ++F+DDN  T    S +  F 
Sbjct: 308 SDRLDAASQTTDFVNQWTKESLFFQICALLTTALIL--ANKFLDDNTFTNQSWSQVTGFR 365

Query: 458 VTKLDEAYQ 484
              L+   Q
Sbjct: 366 TALLNSFEQ 374


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 559 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDD 699
           NL N ++       S+K +  +I D   PK +++ LN+VP +  +DD
Sbjct: 333 NLANTESVNASDEGSDKSQKGIISDS--PKLLSIPLNNVPSKSLNDD 377


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 200 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 367
           +QV+PD   S +  R++N F+ND  E    +  KL    +  + +S R++   +  +L
Sbjct: 46  KQVHPDTGISNQAMRILNSFVNDIFERIATEASKLA-AYNKKSTISSREIQTAVRLIL 102


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 471 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 373
           SSF+ RKF   LSSS ++ L++    N++   T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 520 KINLCNIQFQ-SLINLLNLQATTIMSLNSNKIKADLIPDEND 642
           K+ L  +QFQ S+ NL+N Q     ++    ++   +P+EN+
Sbjct: 314 KLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPLPNENE 355


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 489 GNWYASSSFVTRKFAKKLSSSCVKTLSST 403
           G WY+  S  T    K+L  SC   L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
 Frame = +2

Query: 266 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 364
           +EIEN+ + K VET+D      +  K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,702
Number of Sequences: 5004
Number of extensions: 50982
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)