Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k11
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.33
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.43
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.3
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 4.0
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 26 5.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.1
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 7.1
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.9 bits (64), Expect = 0.33
Identities = 36/122 (29%), Positives = 55/122 (45%)
Frame = -3
Query: 629 TLSVCIVSLYVSTEPLGPSAIEISVTLFTIKPLFLTFSL*SCAPSSTTSARAVAWARGTP 450
T S S S+ S S+T ++ +T S S A SSTTS+ ++A +
Sbjct: 110 TSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSS--SLASSSTTSS-SLASSSTNS 166
Query: 449 STSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKTSMMLSSELSSCTFCTS 270
+TS + S A S T+++LA SS + + TS LSS +S + +S
Sbjct: 167 TTSATPTSSATSSSLSSTAASNSA-TSSSLASSSLNSTTSATATSSSLSSTAASNSATSS 225
Query: 269 SL 264
SL
Sbjct: 226 SL 227
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.43
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Frame = -3
Query: 641 SAINTLS-VCIVSLYVSTEPLGPSAIEISVTLFTIKPLFLT---FSL*SCAPSSTTSARA 474
+A+NT + + S+ S+ P+ S++ S T T + T + + SST +
Sbjct: 448 TALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSS 507
Query: 473 VAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSS---RDE*LVSFKTSMMLS 303
A TP TS S ++ + P A ++ +T++++ +SS +V+ T + S
Sbjct: 508 TALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSS 567
Query: 302 SELSSCTFCTSSLNIEAGRLLRAWRAANA 216
S L+S T TSS + + + N+
Sbjct: 568 SVLNSSTPITSSTVVNTSTPITRYSVLNS 596
Score = 28.3 bits (60), Expect = 1.0
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 7/173 (4%)
Frame = -3
Query: 641 SAINTLSVCIVSLYVSTE-PLGPSAIEISVTLFTIKPLFLT---FSL*SCAPSSTTSARA 474
S +N+ + S V+T P+ S++ S T T + T + + SST +
Sbjct: 2884 SVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSS 2943
Query: 473 VAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSS---RDE*LVSFKTSMMLS 303
A TP TS S ++ + P A ++ +T++++ +SS +V+ T + S
Sbjct: 2944 TALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSS 3003
Query: 302 SELSSCTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQNLNFIVDV*NDLIFN 144
S L+S T TSS + + + N+ S S LN + + + N
Sbjct: 3004 SVLNSSTPITSSTVVNTSTPITSSTVVNS-STPITSSTALNTSTPITSSTVLN 3055
Score = 27.9 bits (59), Expect = 1.3
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Frame = -3
Query: 641 SAINTLSVCIVSLYVSTE-PLGPSAIEIS---VTLFTIKPLFLTFSL*SCAPSSTTSARA 474
S +N+ + S V+T P+ S + S +T T+ + S SST +
Sbjct: 2788 SVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSS 2847
Query: 473 VAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSS---RDE*LVSFKTSMMLS 303
A TP TS S ++ + P A ++ +T++++ +SS +V+ T + S
Sbjct: 2848 TALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSS 2907
Query: 302 SELSSCTFCTSS 267
S L+S T TSS
Sbjct: 2908 SVLNSSTPITSS 2919
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSS---RDE*LVS 327
SST + A TP TS S ++ + P A ++ +T++++ +SS +V+
Sbjct: 2612 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVN 2671
Query: 326 FKTSMMLSSELSSCTFCTSS 267
T + SS L+S T TSS
Sbjct: 2672 TSTPITSSSVLNSSTPITSS 2691
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS + V+ + P S+ + ++++ +SS ++ +
Sbjct: 3416 SSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTP---ITSSS 3472
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLL 240
+ S+ +SS T TSS+ I + +L
Sbjct: 3473 VLNSSTPISSSTVITSSVVIGSSSVL 3498
Score = 26.6 bits (56), Expect = 3.1
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSS---RDE*LVS 327
SST + A TP TS S ++ + P A ++ +T++++ +SS +++
Sbjct: 704 SSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSILN 763
Query: 326 FKTSMMLSSELSSCTFCTSS 267
T + SS L+S T TSS
Sbjct: 764 SSTPITSSSVLNSSTPITSS 783
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/86 (24%), Positives = 42/86 (48%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS S ++ + P A ++ +T++++ +SS ++ T
Sbjct: 656 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSST---AITSST 712
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLL 240
++ S+ ++S + SS I + L
Sbjct: 713 ALNTSTPITSSSVLNSSTPITSSTAL 738
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/88 (22%), Positives = 42/88 (47%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS S ++ + P ++ +T++ + +SS ++ T
Sbjct: 1016 SSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTP---ITSST 1072
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLLRA 234
++ S+ ++S + SS I + +L +
Sbjct: 1073 ALNTSTPITSSSVLNSSTPITSSTVLNS 1100
Score = 25.8 bits (54), Expect = 5.3
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = -3
Query: 641 SAINTLS-VCIVSLYVSTEPLGPSAIEIS---VTLFTIKPLFLTFSL*SCAPSSTTSARA 474
+A+NT + + S+ S+ P+ S++ S +T T+ + S SST +
Sbjct: 1912 TALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSSTPITSS 1971
Query: 473 VAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKTSMMLSSEL 294
A TP TS S ++ + P ++ +T++++ +SS ++ T + S+ +
Sbjct: 1972 TALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTP---ITSSTVVNTSTPI 2028
Query: 293 SSCTFCTSSLNIEAGRLL 240
+S T SS I + L
Sbjct: 2029 TSSTVVNSSTPITSSTAL 2046
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS S ++ + P A ++ +T++++ +SS ++ T
Sbjct: 1748 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTP---ITSST 1804
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLL 240
++ S+ ++S + SS I + ++
Sbjct: 1805 ALNTSTPITSSSVLNSSTPITSSTVV 1830
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/88 (23%), Positives = 43/88 (48%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS S ++ + P A ++ +T++++ +SS ++ T
Sbjct: 1844 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTP---ITSST 1900
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLLRA 234
+ S+ ++S T +S I + +L +
Sbjct: 1901 VLNSSTPITSSTALNTSTPITSSSVLNS 1928
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/88 (23%), Positives = 43/88 (48%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS S ++ + P A ++ +T++++ +SS ++ T
Sbjct: 2036 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTP---ITSST 2092
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLLRA 234
+ S+ ++S T +S I + +L +
Sbjct: 2093 VLNSSTPITSSTALNTSTPITSSSVLNS 2120
Score = 25.0 bits (52), Expect = 9.3
Identities = 21/88 (23%), Positives = 42/88 (47%)
Frame = -3
Query: 497 SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKT 318
SST + A TP TS S ++ + P S+ +T++++ +SS ++ T
Sbjct: 1064 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTP---ITSST 1120
Query: 317 SMMLSSELSSCTFCTSSLNIEAGRLLRA 234
+ S+ ++S T +S I + +L +
Sbjct: 1121 VVNTSTPITSSTALNTSTPITSSSVLNS 1148
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -3
Query: 554 TLFTIKPLFLTFSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRM 375
T FT T S S A SST+ A + +TS S VS PP + F+T +
Sbjct: 649 TTFTSSTSISTSSS-STATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFI 707
Query: 374 TAAALA 357
T+++L+
Sbjct: 708 TSSSLS 713
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 384 PADDCRSPGAFVARRIISVFQDF 316
P ++ +S +FV RRI S+ QDF
Sbjct: 99 PLEESKSSMSFVTRRIQSMLQDF 121
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 572 QKVPKVQWTHINLQYTQITCLL 637
+ V KV WT+IN I CLL
Sbjct: 176 KNVTKVAWTYINDSTRSIACLL 197
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.1
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = -3
Query: 599 VSTEPLGPSAIEISVTLFTIKPLFLTFSL*SCAPSSTTSARAVAWARGT--PSTSRSRVS 426
+S+ PS+ S T + K +FS + SST+S+ + + + P++S S S
Sbjct: 343 ISSSSSSPSSSSFSSTTSSSKSSS-SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSS 401
Query: 425 *APPQEQDHACFSTQRMTAAALAHSSRDE*LVSFKTSMMLSSELSSCTFCTSS 267
+ + S+ ++A H+S S +S LSS LSS T+S
Sbjct: 402 SLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSS-LSSKPILTAS 453
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 100 KIKFSIRNLHLPA*ILNIRSFHTSTMKFKFCSDGDC 207
K FS+ ++ LP L + H F FC D C
Sbjct: 128 KSSFSVLDIGLPMSALQRKMMHRLVQYFAFCIDHFC 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,952
Number of Sequences: 5004
Number of extensions: 46830
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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