Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k11
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0062 + 17607290-17608852                                         30   1.8  
01_05_0236 + 19685569-19685661,19686509-19686775,19686854-196869...    29   3.2  
06_01_0454 - 3234331-3236299,3237254-3238074                           28   5.5  
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    28   5.5  
11_06_0690 + 26303733-26306540                                         28   7.3  
02_04_0338 - 22133181-22133537                                         27   9.7  

>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 484 DVVDEGAQDYKENVKNNGFMVNKVTDISIAEGP 582
           D+   GAQD    + ++GFMVN + +   A GP
Sbjct: 89  DIDLHGAQDIARQMVHDGFMVNLIREFDRAPGP 121


>01_05_0236 +
           19685569-19685661,19686509-19686775,19686854-19686940,
           19688637-19688681,19689029-19689064
          Length = 175

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 340 SSRDECARAAAVIRWVLKQAWSC 408
           SSR EC R A V+ WV+  A  C
Sbjct: 146 SSRSECMRIAMVLGWVIMVAQEC 168


>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 466 HATALADVVDEGAQDYKENVKNNGFMVNKVTDISI 570
           HA A AD +DE ++D+++ V++  + +    D+S+
Sbjct: 53  HALADADQLDELSKDWRDRVRDLAYDIEDCIDLSV 87


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 618 VYCKFICVH*TFGTFCY*NICHFIHHKAVILDIFFI 511
           VYC  + +  +  +FCY  +C+F H K    DI+ +
Sbjct: 242 VYCPRVAL--SLQSFCYTQLCYFFHKKKDENDIYLM 275


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 497 SSTTSARAVAWARGTPS--TSRSRVS*APPQEQDHACFSTQRMTAAALA 357
           + T++A  V+W    P   TS +  S A P  Q H    +Q   AAA A
Sbjct: 776 AETSAASPVSWPTAGPPGVTSSTAASVASPDSQPHTPLFSQAAAAAAAA 824


>02_04_0338 - 22133181-22133537
          Length = 118

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 GLRQSSAGY*NRRGLVLAGALSSRETYWCWECLAP 466
           GLR + AG   RRG  + G+  S E  W W   AP
Sbjct: 69  GLRHTKAG---RRGAPVLGSHMSAELEWWWSIGAP 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,838
Number of Sequences: 37544
Number of extensions: 324138
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)