Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k11
(646 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533452-1|CAG38483.1| 199|Homo sapiens COMMD4 protein. 48 4e-05
BC068998-1|AAH68998.1| 199|Homo sapiens COMM domain containing ... 48 4e-05
AY542160-1|AAS22242.1| 199|Homo sapiens COMMD4 protein. 48 4e-05
AK000459-1|BAA91178.1| 140|Homo sapiens protein ( Homo sapiens ... 46 2e-04
BC000837-1|AAH00837.2| 139|Homo sapiens COMMD4 protein protein. 44 6e-04
BX537570-1|CAD97787.1| 1004|Homo sapiens hypothetical protein pr... 30 6.1
BC012191-1|AAH12191.1| 377|Homo sapiens hypothetical protein MG... 30 6.1
AY358485-1|AAQ88849.1| 402|Homo sapiens galactosyltransferase p... 30 6.1
AL392104-1|CAI40176.1| 1957|Homo sapiens Rho GTPase activating p... 30 6.1
AL355979-1|CAI14323.1| 1957|Homo sapiens Rho GTPase activating p... 30 6.1
AB037845-1|BAA92662.2| 1944|Homo sapiens KIAA1424 protein protein. 30 6.1
>CR533452-1|CAG38483.1| 199|Homo sapiens COMMD4 protein.
Length = 199
Score = 47.6 bits (108), Expect = 4e-05
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Frame = +1
Query: 175 MKFKFCSDGDCPXXXXXXXXXXXXXXXXIFRELVQKVQED----NSD-DSIMEVLKDTNY 339
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 340 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 519
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 520 NVKNNGFMVNKVTDI 564
+++ +N++ +
Sbjct: 120 HLRVCSLRMNRLAGV 134
>BC068998-1|AAH68998.1| 199|Homo sapiens COMM domain containing 4
protein.
Length = 199
Score = 47.6 bits (108), Expect = 4e-05
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Frame = +1
Query: 175 MKFKFCSDGDCPXXXXXXXXXXXXXXXXIFRELVQKVQED----NSD-DSIMEVLKDTNY 339
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 340 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 519
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 520 NVKNNGFMVNKVTDI 564
+++ +N++ +
Sbjct: 120 HLRVCSLRMNRLAGV 134
>AY542160-1|AAS22242.1| 199|Homo sapiens COMMD4 protein.
Length = 199
Score = 47.6 bits (108), Expect = 4e-05
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Frame = +1
Query: 175 MKFKFCSDGDCPXXXXXXXXXXXXXXXXIFRELVQKVQED----NSD-DSIMEVLKDTNY 339
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 340 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 519
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 520 NVKNNGFMVNKVTDI 564
+++ +N++ +
Sbjct: 120 HLRVCSLRMNRLAGV 134
>AK000459-1|BAA91178.1| 140|Homo sapiens protein ( Homo sapiens
cDNA FLJ20452 fis, clone KAT05695. ).
Length = 140
Score = 45.6 bits (103), Expect = 2e-04
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Frame = +1
Query: 175 MKFKFCSDGDCPXXXXXXXXXXXXXXXXIFRELVQKVQED----NSD-DSIMEVLKDTNY 339
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 340 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 519
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 520 NVK 528
+++
Sbjct: 120 HLR 122
>BC000837-1|AAH00837.2| 139|Homo sapiens COMMD4 protein protein.
Length = 139
Score = 43.6 bits (98), Expect = 6e-04
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Frame = +1
Query: 178 KFKFCSDGDCPXXXXXXXXXXXXXXXXIFRELVQKVQED----NSD-DSIMEVLKDTNYS 342
+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 60
Query: 343 SRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKEN 522
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E +++
Sbjct: 61 SGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKH 119
Query: 523 VK 528
++
Sbjct: 120 LR 121
>BX537570-1|CAD97787.1| 1004|Homo sapiens hypothetical protein
protein.
Length = 1004
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 424 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 588
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 684 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 743
Query: 589 SVDTYKLTIHTDNVF 633
S D+ + VF
Sbjct: 744 SEDSGSRKDSSSEVF 758
>BC012191-1|AAH12191.1| 377|Homo sapiens hypothetical protein
MGC4655 protein.
Length = 377
Score = 30.3 bits (65), Expect = 6.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 379 RWVLKQAWSCSCGGAQ--LTRDLLVLGVPRAHATALADVVDEGAQDY 513
R ++Q W G Q L R + +LGVPR + AD V EGA+ +
Sbjct: 107 RQAVRQTWGAE-GRVQGALVRRVFLLGVPRGAGSGGADEVGEGARTH 152
>AY358485-1|AAQ88849.1| 402|Homo sapiens galactosyltransferase
protein.
Length = 402
Score = 30.3 bits (65), Expect = 6.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 379 RWVLKQAWSCSCGGAQ--LTRDLLVLGVPRAHATALADVVDEGAQDY 513
R ++Q W G Q L R + +LGVPR + AD V EGA+ +
Sbjct: 132 RQAVRQTWGAE-GRVQGALVRRVFLLGVPRGAGSGGADEVGEGARTH 177
>AL392104-1|CAI40176.1| 1957|Homo sapiens Rho GTPase activating
protein 21 protein.
Length = 1957
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 424 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 588
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 854 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 913
Query: 589 SVDTYKLTIHTDNVF 633
S D+ + VF
Sbjct: 914 SEDSGSRKDSSSEVF 928
>AL355979-1|CAI14323.1| 1957|Homo sapiens Rho GTPase activating
protein 21 protein.
Length = 1957
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 424 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 588
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 854 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 913
Query: 589 SVDTYKLTIHTDNVF 633
S D+ + VF
Sbjct: 914 SEDSGSRKDSSSEVF 928
>AB037845-1|BAA92662.2| 1944|Homo sapiens KIAA1424 protein protein.
Length = 1944
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 424 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 588
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 841 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 900
Query: 589 SVDTYKLTIHTDNVF 633
S D+ + VF
Sbjct: 901 SEDSGSRKDSSSEVF 915
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,532,258
Number of Sequences: 237096
Number of extensions: 1725972
Number of successful extensions: 3374
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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