Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k11
         (646 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2393|ABC66146.1|  197|Drosophila melanogaster CG34039-P...    51   2e-06
AY071506-1|AAL49128.1|  460|Drosophila melanogaster RE56061p pro...    31   1.0  
AE014297-3027|AAF55909.2|  460|Drosophila melanogaster CG31176-P...    31   1.0  
AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611 prot...    29   5.4  
AY119249-1|AAM51109.1|  508|Drosophila melanogaster SD21513p pro...    29   7.1  
AE014298-2428|AAF48627.1|  508|Drosophila melanogaster CG9784-PA...    29   7.1  

>AE014296-2393|ABC66146.1|  197|Drosophila melanogaster CG34039-PA
           protein.
          Length = 197

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
 Frame = +1

Query: 178 KFKFCSDGDCPXXXXXXXXXXXXXXXXI-FRELVQKVQEDNSDDSIMEV-LKDTNYSSRD 351
           KF+FC +GDCP                    +L   V +    ++  E  +K    +  +
Sbjct: 1   KFRFCGEGDCPDWVLAEIISTLSNLSIENLEQLSDLVAQRICGETFEEAKIKSLTSTLTN 60

Query: 352 ECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKENVKN 531
           E   A A I ++L  A   SC  +    ++  LG+P+ HA A+  V+ + +   ++ + N
Sbjct: 61  EGKTAVACINFMLTSAARYSCSESIFGEEIQQLGLPKDHAAAMCRVLQKHSATIRQTLIN 120

Query: 532 NGFMVNKVTDISIAEGPKGSVDTY 603
             F +N++T +     P  +   Y
Sbjct: 121 KSFRINELTSVRDISTPGQTPPNY 144


>AY071506-1|AAL49128.1|  460|Drosophila melanogaster RE56061p
           protein.
          Length = 460

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 318 SLERH*LFVSRRM-RQGCGSHPLGTKTGVVLFLRGRSAHARPTGAGSAS 461
           S+  H L  S +    G G+  LGT TG   + RGR  H  P   G  S
Sbjct: 145 SVHNHRLTASMQQGSSGLGNSSLGTGTGTANYRRGRRLHVNPPRTGIRS 193


>AE014297-3027|AAF55909.2|  460|Drosophila melanogaster CG31176-PA
           protein.
          Length = 460

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 318 SLERH*LFVSRRM-RQGCGSHPLGTKTGVVLFLRGRSAHARPTGAGSAS 461
           S+  H L  S +    G G+  LGT TG   + RGR  H  P   G  S
Sbjct: 145 SVHNHRLTASMQQGSSGLGNSSLGTGTGTANYRRGRRLHVNPPRTGIRS 193


>AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611
           protein.
          Length = 1089

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 32/110 (29%), Positives = 48/110 (43%)
 Frame = -3

Query: 518 SL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE 339
           +L + A +   +A A A A    STS S  S A       A  ++   TAAA   S+   
Sbjct: 157 ALDATAATQAATATATATAAAATSTSTSATSAAATAAATAATSASTTATAAA-GSSNTTT 215

Query: 338 *LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQ 189
              +  T+   ++  S+ T  TSS +        A  AA+A SG + SE+
Sbjct: 216 TTAATTTATCATAATSTSTAATSSSSSVTSAAAAAAAAASA-SGVAHSEE 264


>AY119249-1|AAM51109.1|  508|Drosophila melanogaster SD21513p
           protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 463 AHATALADVVDEGAQDYKENVKNNGFMVNKVTDI 564
           AH TA   ++DE  +DYK+ ++N+ + V +  +I
Sbjct: 176 AHLTAHDHMMDERIEDYKQILENHHYHVKRYREI 209


>AE014298-2428|AAF48627.1|  508|Drosophila melanogaster CG9784-PA
           protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 463 AHATALADVVDEGAQDYKENVKNNGFMVNKVTDI 564
           AH TA   ++DE  +DYK+ ++N+ + V +  +I
Sbjct: 176 AHLTAHDHMMDERIEDYKQILENHHYHVKRYREI 209


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,900,463
Number of Sequences: 53049
Number of extensions: 545177
Number of successful extensions: 1343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)