Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k11
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-4|AAB53058.2|  175|Caenorhabditis elegans Hypothetical ...    29   3.7  
AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical ...    28   4.9  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF000198-4|AAB53058.2|  175|Caenorhabditis elegans Hypothetical
           protein T28F2.2 protein.
          Length = 175

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 319 VLKDTN--YSSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVV 492
           +L DT+   +S +       +  W+L +     C    L ++++ LG+P  H   L  V 
Sbjct: 42  ILSDTSEGINSVNNHTNLVLIGNWLLLKPAGYDCPSTDLEKEVVQLGLPPEHGIQLRKVY 101

Query: 493 DEGAQDYKENV 525
           +    + +E V
Sbjct: 102 ENYKSELREKV 112


>AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical
           protein Y48A6B.13 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 457 PRAHATALADVVDEGAQDYKENVKN 531
           P AH+T LAD +D   ++  +NVK+
Sbjct: 167 PAAHSTTLADFIDSTKKETHKNVKH 191


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 545 TIKPLFLTFSL*SCAPSSTTSARAVAWARGTPSTSRS 435
           T KP  L+ +  +  PS+TTS    +  + TPS SR+
Sbjct: 568 TTKPTTLSTTTTTQVPSTTTSVTVPSTQKATPSPSRT 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,715,932
Number of Sequences: 27780
Number of extensions: 275869
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)