Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k09
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 3.4
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.4
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.4
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 4.5
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 5.9
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 5.9
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 7.8
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.8
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 637 FSASAVFFILMEDIVQMD-FEILQFFLKTIYKGL**SSFTLFIYSLGSLCLIVILFRPIL 461
FS S +FF+ IV F IL F + L F F++SL L + ILF P+L
Sbjct: 131 FSFSFLFFLSQIFIVYFSSFPILHFLF---FFFLCVCVFLSFLFSLSHLLSLAILFLPLL 187
Query: 460 M 458
+
Sbjct: 188 L 188
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 551 DSFQKELKDFKIHLYNIFHQYKEYCRCT 634
D+ QK + K LY + QYK+ RC+
Sbjct: 841 DTSQKYQSELKNELYALLEQYKKQLRCS 868
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 389 IDFLMGENDINDKISLNEWVLST 457
+D+LM N+ ND I LNE + T
Sbjct: 166 MDYLMRHNEFNDAIDLNEVDIKT 188
>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 250
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 692 RRNFLKNLCVMLQCGY 645
RR+ +KNLC+ L C Y
Sbjct: 50 RRSEMKNLCIQLYCSY 65
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 143 GGKLSFSTFKRYRPFYVLPPKVEKRDTCACKKHENLQIK 259
GG L S PF+V EKR C+C ++E +++
Sbjct: 150 GGTLPLSITLPNHPFHVPVYLFEKRLHCSCSEYEESRLR 188
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 476 KNNDETKTTKRVDKESKTGSLQTLIDSFQKELKDFKIHL 592
K DE + D E + Q L +QKEL FK+ L
Sbjct: 1719 KQIDEFHVIRVQDLEEREKKDQLLFQRYQKELNGFKVQL 1757
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 297 KILMILWLWLYVM*NLK 347
K L ILWLWL+ M NL+
Sbjct: 414 KHLNILWLWLFRMLNLR 430
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 143 LLERISVAQARKFYEFVTLMYRALDTLTLLRS 48
L+ + +A A EFV+ +YR L L +LRS
Sbjct: 662 LVSELDLALAEDAPEFVSKVYRYLHVLLILRS 693
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 348 FLDFTSHTTIATRSSRSLVGNTPIDLRTLALICKFSCFLQAQVSRFSTF 202
F+ F + RSL PIDL L L F C + VS F F
Sbjct: 175 FVQFMEVKSALISYDRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINF 223
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 377 INKHIDFLMGENDINDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGSLQTLIDS 556
IN H+D L G ++ + I+ E V TH R D+ T + K S++G ++
Sbjct: 15 INFHLDELEGNHESHPAITHQEKVTQTH--RDSVKIDDILTRLSISK-SESGQATPVLTP 71
Query: 557 FQKELKDF 580
+ + D+
Sbjct: 72 QLEGMNDY 79
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 303 RSLVGNTPIDLRTLALICKFSCF 235
R L+ N ID + +L C F+C+
Sbjct: 76 RKLIFNKAIDFKLNSLCCSFTCY 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,194
Number of Sequences: 5004
Number of extensions: 62238
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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