Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k09
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    36   0.031
04_03_0579 + 17481012-17481219,17481776-17481849,17482207-174822...    30   1.5  
01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395     28   8.1  

>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +2

Query: 176 YRPFYVLPPKVEKRDTCACKKHENLQIKANVLKSIGVLPTKDLDDLVAMVVCDVKSKKCS 355
           Y PF   PPK E++   A +   +L +    L++ G    +  DDL   +     S  CS
Sbjct: 124 YLPFLPQPPKCEQQQNSAGQSSSSLMLLDADLRNSGHADDEHTDDLKDFLNL---SSDCS 180

Query: 356 Y-GEC-AMCINKHIDFLMGENDINDKISLNE 442
           + G+C AM  N+ ++F      +   IS NE
Sbjct: 181 FHGKCSAMAYNEQMEFQFLSEQLGIAISNNE 211


>04_03_0579 +
           17481012-17481219,17481776-17481849,17482207-17482211,
           17482523-17482607,17484144-17484231,17484307-17484398,
           17484903-17485055
          Length = 234

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 147 ESYHFLHLKDIDHFMF-CHQKLRSVILALVRNMKIYKL 257
           E   +L L  I H +  CHQKLR++ +AL+  M  +K+
Sbjct: 93  EQVRYLALVRIAHILHVCHQKLRAIPIALLCKMTQFKM 130


>01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395
          Length = 262

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 317 AMVVCDVKSKKCSYGECAMCINKHIDFLMGENDINDKISLNEWVLS 454
           A  VC   +++ + G+C  C  +H+D  + +   N  I  ++W  S
Sbjct: 78  AGAVCSC-ARRAAAGDCRSCTLRHVDERLRDAGYNSAICKSKWTRS 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,580
Number of Sequences: 37544
Number of extensions: 322307
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)