Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k09
         (695 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    28   0.32 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   4.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   7.0  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 470  SKKNNDETKTTKRVDKESKTGSLQTL-IDSFQKELKDFKIHLYNI 601
            ++K  ++ + TKR+    +  ++Q   I S+QKEL D ++ + NI
Sbjct: 1560 AEKELEDAQLTKRLSSLVEAKNIQNQNIRSYQKELADLRLEVANI 1604


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 506 RVDKESKTGSLQTLIDSFQKELKDFKIHL 592
           R++ + K      LI   +KEL DF+  L
Sbjct: 676 RLEMQKKRSEYSQLIQEHEKELADFRAEL 704


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 147 PPSRTYFCSPSTKILRIRNVNVSSPRYINVTPQHEQH 37
           PP+  +   P  ++  + +V + +P    + PQ +QH
Sbjct: 109 PPTTRFAPEPRAEVKFVPSVPLKTPPVRPLLPQQQQH 145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,020
Number of Sequences: 2352
Number of extensions: 15143
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)