Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k09
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein. 31 5.2
BC035913-1|AAH35913.1| 737|Homo sapiens PCNT protein protein. 31 5.2
AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein. 31 5.2
AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein. 31 5.2
X16841-1|CAA34739.1| 761|Homo sapiens protein ( Human mRNA for ... 30 6.9
U63041-1|AAB04558.1| 848|Homo sapiens neural cell adhesion mole... 30 6.9
S71824-1|AAB31836.1| 848|Homo sapiens N-CAM protein. 30 6.9
BC047244-1|AAH47244.1| 858|Homo sapiens neural cell adhesion mo... 30 6.9
BC014205-1|AAH14205.2| 601|Homo sapiens NCAM1 protein protein. 30 6.9
AB209443-1|BAD92680.1| 807|Homo sapiens Neural cell adhesion mo... 30 6.9
>U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.
Length = 3321
Score = 30.7 bits (66), Expect = 5.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 416 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 592
+ ++ N ++ T + + D R + +K S ++ L + FQKEL + + L
Sbjct: 332 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 391
Query: 593 YNIFHQYKEYCRCTKNLDSH 652
IF + R +NL+SH
Sbjct: 392 EKIFQDKNQAERALRNLESH 411
>BC035913-1|AAH35913.1| 737|Homo sapiens PCNT protein protein.
Length = 737
Score = 30.7 bits (66), Expect = 5.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 416 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 592
+ ++ N ++ T + + D R + +K S ++ L + FQKEL + + L
Sbjct: 319 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 378
Query: 593 YNIFHQYKEYCRCTKNLDSH 652
IF + R +NL+SH
Sbjct: 379 EKIFQDKNQAERALRNLESH 398
>AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.
Length = 3336
Score = 30.7 bits (66), Expect = 5.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 416 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 592
+ ++ N ++ T + + D R + +K S ++ L + FQKEL + + L
Sbjct: 332 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 391
Query: 593 YNIFHQYKEYCRCTKNLDSH 652
IF + R +NL+SH
Sbjct: 392 EKIFQDKNQAERALRNLESH 411
>AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.
Length = 3284
Score = 30.7 bits (66), Expect = 5.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 416 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 592
+ ++ N ++ T + + D R + +K S ++ L + FQKEL + + L
Sbjct: 359 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 418
Query: 593 YNIFHQYKEYCRCTKNLDSH 652
IF + R +NL+SH
Sbjct: 419 EKIFQDKNQAERALRNLESH 438
>X16841-1|CAA34739.1| 761|Homo sapiens protein ( Human mRNA for a
nontransmembrane isoform of N-CAM from skeletal muscle.
).
Length = 761
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 120 PSTKILRIRNVNVSSPRYINVTPQHEQHFANY 25
PS+ I+ N S Y+ VTP E F NY
Sbjct: 446 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 477
>U63041-1|AAB04558.1| 848|Homo sapiens neural cell adhesion
molecule CD56 protein.
Length = 848
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 120 PSTKILRIRNVNVSSPRYINVTPQHEQHFANY 25
PS+ I+ N S Y+ VTP E F NY
Sbjct: 446 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 477
>S71824-1|AAB31836.1| 848|Homo sapiens N-CAM protein.
Length = 848
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 120 PSTKILRIRNVNVSSPRYINVTPQHEQHFANY 25
PS+ I+ N S Y+ VTP E F NY
Sbjct: 446 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 477
>BC047244-1|AAH47244.1| 858|Homo sapiens neural cell adhesion
molecule 1 protein.
Length = 858
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 120 PSTKILRIRNVNVSSPRYINVTPQHEQHFANY 25
PS+ I+ N S Y+ VTP E F NY
Sbjct: 456 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 487
>BC014205-1|AAH14205.2| 601|Homo sapiens NCAM1 protein protein.
Length = 601
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 120 PSTKILRIRNVNVSSPRYINVTPQHEQHFANY 25
PS+ I+ N S Y+ VTP E F NY
Sbjct: 199 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 230
>AB209443-1|BAD92680.1| 807|Homo sapiens Neural cell adhesion
molecule 1, 120 kDa isoform precursor variant protein.
Length = 807
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 120 PSTKILRIRNVNVSSPRYINVTPQHEQHFANY 25
PS+ I+ N S Y+ VTP E F NY
Sbjct: 527 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 558
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,398,098
Number of Sequences: 237096
Number of extensions: 1920446
Number of successful extensions: 3599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3589
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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