Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k09
         (695 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058436-1|AAL13665.1|  604|Drosophila melanogaster GH21622p pro...    29   6.0  
AE014296-2861|AAF49382.2|  604|Drosophila melanogaster CG6652-PA...    29   6.0  
AE014296-2860|AAN11730.2|  569|Drosophila melanogaster CG6652-PB...    29   6.0  
AY166752-1|AAN85714.1| 1400|Drosophila melanogaster loechrig iso...    29   8.0  
AY070541-1|AAL48012.1| 1400|Drosophila melanogaster LD22662p pro...    29   8.0  
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed...    29   8.0  
AE014297-2948|AAF55864.2| 1400|Drosophila melanogaster CG17299-P...    29   8.0  

>AY058436-1|AAL13665.1|  604|Drosophila melanogaster GH21622p
           protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 380 NKHIDFLMGENDINDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGSLQTL 547
           NKH   L  + +++++  L E + S  +   +K+ND     ++V  ESK    Q L
Sbjct: 178 NKHYSQLNKDKNLDERQKLQEKLKSLEQRLEEKDNDMKLMARKVQLESKNIRQQLL 233


>AE014296-2861|AAF49382.2|  604|Drosophila melanogaster CG6652-PA,
           isoform A protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 380 NKHIDFLMGENDINDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGSLQTL 547
           NKH   L  + +++++  L E + S  +   +K+ND     ++V  ESK    Q L
Sbjct: 178 NKHYSQLNKDKNLDERQKLQEKLKSLEQRLEEKDNDMKLMARKVQLESKNIRQQLL 233


>AE014296-2860|AAN11730.2|  569|Drosophila melanogaster CG6652-PB,
           isoform B protein.
          Length = 569

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 380 NKHIDFLMGENDINDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGSLQTL 547
           NKH   L  + +++++  L E + S  +   +K+ND     ++V  ESK    Q L
Sbjct: 178 NKHYSQLNKDKNLDERQKLQEKLKSLEQRLEEKDNDMKLMARKVQLESKNIRQQLL 233


>AY166752-1|AAN85714.1| 1400|Drosophila melanogaster loechrig
           isoform I protein.
          Length = 1400

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 179 RPFYVLPPKVEKRDTCACKKHEN 247
           RP Y+LPP +E+R    CK+ ++
Sbjct: 184 RPGYLLPPYIERRRLSQCKEEDD 206


>AY070541-1|AAL48012.1| 1400|Drosophila melanogaster LD22662p
           protein.
          Length = 1400

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 179 RPFYVLPPKVEKRDTCACKKHEN 247
           RP Y+LPP +E+R    CK+ ++
Sbjct: 184 RPGYLLPPYIERRRLSQCKEEDD 206


>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1013

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 509 VDKESKTGSLQTLIDSFQKELKDFKIHLYNIFHQYKE-YCRCTKNLDSHTVALHID 673
           VDK SK   +Q ++    ++LK   + L N+F + K  YC    +L S T+   ++
Sbjct: 804 VDKFSKFAMVQPILSRTIEDLKAPLLQLMNVFPKAKTIYCDNEPSLKSQTIVAMLE 859


>AE014297-2948|AAF55864.2| 1400|Drosophila melanogaster CG17299-PF,
           isoform F protein.
          Length = 1400

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 179 RPFYVLPPKVEKRDTCACKKHEN 247
           RP Y+LPP +E+R    CK+ ++
Sbjct: 184 RPGYLLPPYIERRRLSQCKEEDD 206


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,099,220
Number of Sequences: 53049
Number of extensions: 608569
Number of successful extensions: 1778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)