Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k09
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 326 VCDVKSKKCSYGECAMCINKHI 391
           VC VK   CS+G      N+++
Sbjct: 541 VCGVKGIPCSWGRAINVANRYV 562


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 19  LTIVGKMLFVLRSNVNVSRARYINVTNS*NFR 114
           +T    +LF+L   + V+   +I V N  NFR
Sbjct: 82  ITFASFLLFILLVQIAVAVYAFIVVKNDDNFR 113


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -3

Query: 654 VWLSRFLVHRQYSLY 610
           +W+  F +HR  ++Y
Sbjct: 396 IWIPAFAIHRDSAIY 410


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 383 KHIDFLMGENDINDKISLNEWVLS 454
           +HID + G+N ++  + L+E+  S
Sbjct: 180 RHIDEIRGKNVVDIGVDLSEFYTS 203


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 569 LKDFKIHLYNIFHQYKEY 622
           L+DFK +++ + +Q+K +
Sbjct: 24  LRDFKANIFQVKYQWKYF 41


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 212 KRDTCACKKHENLQIKANVLKSIGVLPTKDLDDLVAMVVCDVKSKKCSYGE 364
           K  +  C K E  + +   L  + +L    +D   + + CD  S   S GE
Sbjct: 111 KEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTYQSNGE 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,299
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)