Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k08
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    30   0.29 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.6  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   3.6  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   8.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   8.4  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -1

Query: 116  IRDIIEKDYFITKLDSKIEKVIS 48
            IRDII+ DY++ +L S ++K+IS
Sbjct: 1122 IRDIIDWDYYLKRLGSVVQKLIS 1144


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -1

Query: 392  TEEQLVKQHVDALSRNILFVDVELHARVKKAQADDESLKVIRKILEENEYEDYFLENGVI 213
            T ++L+ Q+V+A   NI  + +E  A     +    SL ++ K+L ENE  D +    ++
Sbjct: 2438 TVDKLLTQYVNA---NIPSISMETTA----CEVVGTSLSLLNKVLVENEVGDIYSYLKIL 2490

Query: 212  YKGI-----EKKLVLPKIL 171
             KG+      K+++LP+ L
Sbjct: 2491 GKGVNELKSSKQVILPENL 2509


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 410 PRRL--AITEEQLVKQHVDALSRNILFVDVELHARV 309
           P+RL  A TEE ++  H+D + R    V ++L+ RV
Sbjct: 661 PKRLDLAATEETVLIDHIDLIRRKGFGVAIDLNQRV 696


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 245 YEDYFLENGVIYKGIEKKLVLPKI---LDMEIIKKAHRTGHFGKKK 117
           + DY      +Y+GI  K +LPK+   +D + ++   R  HF   K
Sbjct: 314 HSDYTKIRSGVYEGISMKHLLPKLTAAIDKKSVQAKARPVHFEPPK 359


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 263 ILEENEYEDYFLENGVIYKGIEKKLVLPKILDMEIIKKAHRT 138
           ++ ENE  DYF      Y     KLV+P      IIKK   T
Sbjct: 213 VVSENELADYFCLPEESYVMYSNKLVVPP--SDSIIKKCEET 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,510
Number of Sequences: 5004
Number of extensions: 57989
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)