Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17k08
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 32 0.54
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 31 0.94
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 31 1.2
12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743... 30 1.6
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 28 8.7
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 28 8.7
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 31.9 bits (69), Expect = 0.54
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Frame = -1
Query: 653 DVILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSSN---------DQCTAVRE 501
DVILG +L VID +V T D LSS S ++ VRE
Sbjct: 444 DVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVYALSSESLRSRLNQITLEEIPIVRE 503
Query: 500 IIDSYT------PLKTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQLVKQHVDAL 354
D + P K +D R+ +V P+ +RP R+A E VK+HVD L
Sbjct: 504 YPDVFPDDLPGMPPK-RDIEFRIDLV-PGTTPIHKRPYRMAANELAEVKRHVDDL 556
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 31.1 bits (67), Expect = 0.94
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Frame = -1
Query: 653 DVILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSS-----NDQCTAVREIIDS 489
DVILG +L VID +V T YD LSS S N I+
Sbjct: 665 DVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESLRSRLNQITLEEIPIVRE 724
Query: 488 YTPLKTKDAP-------IRLKI-VLKDDVPVSQRPRRLAITEEQLVKQHVDAL 354
Y + D P I I ++ P+ +RP R+A E VK+ VD L
Sbjct: 725 YPDVFPDDLPGMPPKRDIEFSIDLVPGTTPIHKRPYRMAANELAEVKRQVDDL 777
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 30.7 bits (66), Expect = 1.2
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = -1
Query: 650 VILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSSNDQCTAVREIIDSYTPLKT 471
V G+ + +TI+++ RGL E + + + +S++ + R I + P K
Sbjct: 490 VYCGEPAVEDTISIL-RGLRERYELHHGVKISDGALVSAA----VLSDRYITGRFLPDKA 544
Query: 470 KDAPIRLKIVLKDDVPVSQRPRRLAITEEQLVKQHVDALSRNILFVDVELHARVKKAQAD 291
D LK + ++ +P L + ++++ ++ LS D R+ K +AD
Sbjct: 545 IDLVDEAAAKLK--MEITSKPIELDEVDREIIRLEMEKLSLKN-DTDKASKQRLSKLEAD 601
Query: 290 DESLKVIRKILEEN-EYE 240
ESLK +K L E+ EYE
Sbjct: 602 LESLKQKQKNLSEHWEYE 619
>12_01_0810 +
7429834-7429960,7430534-7430696,7430796-7430844,
7431203-7431385,7431824-7431898,7431963-7432148,
7432362-7432450,7432892-7433444
Length = 474
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -1
Query: 332 DVELHARVKKAQADDESLKVIRKILEE--NEYEDYFLENGVIYKGIEKKLVLPKILDMEI 159
D+EL KKA+A S V++ + EE +EY L G +Y E+K +L + +
Sbjct: 115 DIELEGLEKKAKASGASQLVVKDLKEEFVSEYIYPCLRAGAVY---ERKYLLGTSMARPV 171
Query: 158 IKKA 147
I KA
Sbjct: 172 IAKA 175
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 27.9 bits (59), Expect = 8.7
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Frame = -1
Query: 653 DVILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSS-----NDQCTAVREIIDS 489
DVILG +L VID +V T D LSS S N I+
Sbjct: 643 DVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRLNQITLEEIPIVRE 702
Query: 488 YTPLKTKDAP-------IRLKI-VLKDDVPVSQRPRRLAITEEQLVKQHVDAL 354
Y + D P I +I ++ P+ +RP R+A E VK+ VD L
Sbjct: 703 YPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDL 755
>04_04_0666 +
27086568-27086975,27087073-27087477,27088542-27088635,
27088731-27088768,27088853-27088999,27089167-27089266,
27090001-27090953,27091512-27091569,27092904-27093022
Length = 773
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 497 IDSYTPLKTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQ 381
ID + KT+ A K+ ++ V PRRLAI E+Q
Sbjct: 733 IDEISLQKTRLAFAATKVKKEESVNTQDTPRRLAIAEQQ 771
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,229,192
Number of Sequences: 37544
Number of extensions: 326350
Number of successful extensions: 774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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