Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k08
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          38   0.049
BC150287-1|AAI50288.1| 1922|Homo sapiens Dicer1, Dcr-1 homolog (...    31   5.6  
AJ132261-1|CAB38857.2| 1912|Homo sapiens hypothetical helicase K...    31   5.6  
AB028449-1|BAA78691.1| 1924|Homo sapiens helicase-MOI protein.         31   5.6  
AB023145-1|BAA76772.2| 1922|Homo sapiens KIAA0928 protein protein.     31   5.6  
BC029120-1|AAH29120.1|  603|Homo sapiens chromosome 12 open read...    30   7.4  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 37.5 bits (83), Expect = 0.049
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -1

Query: 185 LPKILDMEIIKKAHRTGHFGKKKIRDIIEKDYFITKLDSKIEKVISTCVPCLLASRKSG 9
           +P++L   ++   H+T H G++ +  ++ + ++I  L +  + V   CV C   + K G
Sbjct: 823 VPQLLGAAVVLAVHKTTHLGQESLEKLLVRYFYILHLSALAKTVTQRCVTCPKHNAKQG 881


>BC150287-1|AAI50288.1| 1922|Homo sapiens Dicer1, Dcr-1 homolog
            (Drosophila) protein.
          Length = 1922

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -1

Query: 476  KTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQ--LVKQHVDALSRNILFVDVELHARVKK 303
            K K  P R+ + + D  PV+  P    + +++    K   D ++++ +  + +L    ++
Sbjct: 1361 KKKGLPSRMVVSIFDP-PVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEE 1419

Query: 302  AQADDESLKVIRKILEENEYEDYFLE 225
               ++ESL + R   EE +YED FLE
Sbjct: 1420 EDEEEESL-MWRAPKEEADYEDDFLE 1444


>AJ132261-1|CAB38857.2| 1912|Homo sapiens hypothetical helicase
            K12H4.8-like protein protein.
          Length = 1912

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -1

Query: 476  KTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQ--LVKQHVDALSRNILFVDVELHARVKK 303
            K K  P R+ + + D  PV+  P    + +++    K   D ++++ +  + +L    ++
Sbjct: 1351 KKKGLPSRMVVSIFDP-PVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEE 1409

Query: 302  AQADDESLKVIRKILEENEYEDYFLE 225
               ++ESL + R   EE +YED FLE
Sbjct: 1410 EDEEEESL-MWRAPKEEADYEDDFLE 1434


>AB028449-1|BAA78691.1| 1924|Homo sapiens helicase-MOI protein.
          Length = 1924

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -1

Query: 476  KTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQ--LVKQHVDALSRNILFVDVELHARVKK 303
            K K  P R+ + + D  PV+  P    + +++    K   D ++++ +  + +L    ++
Sbjct: 1363 KKKGLPSRMVVSIFDP-PVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEE 1421

Query: 302  AQADDESLKVIRKILEENEYEDYFLE 225
               ++ESL + R   EE +YED FLE
Sbjct: 1422 EDEEEESL-MWRAPKEEADYEDDFLE 1446


>AB023145-1|BAA76772.2| 1922|Homo sapiens KIAA0928 protein protein.
          Length = 1922

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -1

Query: 476  KTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQ--LVKQHVDALSRNILFVDVELHARVKK 303
            K K  P R+ + + D  PV+  P    + +++    K   D ++++ +  + +L    ++
Sbjct: 1361 KKKGLPSRMVVSIFDP-PVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEE 1419

Query: 302  AQADDESLKVIRKILEENEYEDYFLE 225
               ++ESL + R   EE +YED FLE
Sbjct: 1420 EDEEEESL-MWRAPKEEADYEDDFLE 1444


>BC029120-1|AAH29120.1|  603|Homo sapiens chromosome 12 open reading
           frame 26 protein.
          Length = 603

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 131 FGKKKIRDIIEKDYFITKLDSKIEKVISTCVPCLLASRKSGKK 3
           F +  ++DII+  Y ITK D  + K+ S C   L   R+S KK
Sbjct: 475 FYRAVLQDIIKDCYGITKCDRHVGKIYSKCSSFLDYVRRSLKK 517


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,520,810
Number of Sequences: 237096
Number of extensions: 1902450
Number of successful extensions: 3082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)