Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17k08
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 582 PDLNQTPVNNCDSIY*KLLT 641
           PD + T + NCDS+  K  T
Sbjct: 316 PDHHSTDIQNCDSVKIKFET 335


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 358 ASTCCLTNCSSVMASRLGLCET 423
           AS C LT  +  + S L  CE+
Sbjct: 163 ASKCALTTLTDCLRSELAQCES 184


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 615 HSY*QGFG*GQAYLL 571
           HSY  GFG G A LL
Sbjct: 663 HSYGGGFGFGSAVLL 677


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 615 HSY*QGFG*GQAYLL 571
           HSY  GFG G A LL
Sbjct: 701 HSYGGGFGFGSAVLL 715


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 407 RRLAITEEQLVKQHVDALSRNI 342
           RRL +TE Q VK+  D ++  I
Sbjct: 328 RRLGLTEYQAVKEMHDGIAELI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,260
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)