Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j21
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 332 APGDQ-MPDLDVPVPEK-TPP-PSEAPRDSPSPTEPPKLN 442
           APG Q  P      P++ +PP PS+ P     P  PP  N
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -3

Query: 256 GDTMTVHFKDAVSALQASGFCRRAIVDLTDVLTGFAFFCVQIKSVAVEVWRLPHVAES 83
           G+ +TV F   ++++ A+     A++ +  VLT        I  +    W L  +  S
Sbjct: 422 GEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 102 RRQTSTATDLICTQKKANPVSTS 170
           +RQ+  A DL+ T+K  N + T+
Sbjct: 401 KRQSVPANDLLTTEKDNNEIVTA 423


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 634 SGPQHDPAQQATTPPSRCT 578
           S PQH  +  +T+P +R T
Sbjct: 67  SSPQHSGSSASTSPAARTT 85


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 628 PQHDPAQQATTPPSRCTLHTHHAPSQ 551
           P+  PA+      S  TL T HA SQ
Sbjct: 270 PEAAPARVTLGVTSLLTLSTQHAKSQ 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,519
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)