Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j20
         (221 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   4.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   4.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   4.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   4.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   5.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    19   9.5  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    19   9.5  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    19   9.5  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    19   9.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    19   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -2

Query: 115 FFMCCVRMSHGVNKCLNNNKILTILWDK 32
           FF C    +   ++   N   + I WDK
Sbjct: 312 FFYCAATKNPNFDRMQGNPICVQIPWDK 339


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 64  NNKILTILWDKLSALY 17
           NN+IL ILW     ++
Sbjct: 97  NNQILHILWTSYKKVF 112


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 64  NNKILTILWDKLSALY 17
           NN+IL ILW     ++
Sbjct: 80  NNQILHILWTSYKKVF 95


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 118 VFFMCCVRMSHGVNKCLNNN 59
           V +  CV +     +CL NN
Sbjct: 147 VIYTACVGLLERAFRCLGNN 166


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 130 YVNSEVASFEIMHLLFEPKLYCNYTNF 210
           +  +   S E  HL   P++   YT F
Sbjct: 358 FQTTPTVSVEQPHLFLYPEVSSTYTGF 384


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 62  II*ALINSMAHPNTTHEK 115
           II +L+N+  H N  ++K
Sbjct: 303 IISSLLNNTIHNNNNYKK 320


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 62  II*ALINSMAHPNTTHEK 115
           II +L+N+  H N  ++K
Sbjct: 314 IISSLLNNTIHNNNNYKK 331


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 62  II*ALINSMAHPNTTHEK 115
           II +L+N+  H N  ++K
Sbjct: 314 IISSLLNNTIHNNNNYKK 331


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 62  II*ALINSMAHPNTTHEK 115
           II +L+N+  H N  ++K
Sbjct: 303 IISSLLNNTIHNNNNYKK 320


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 144 FTIYILRSMFFSCV 103
           FT+Y++R+   +C+
Sbjct: 26  FTMYLVRAFCRNCI 39


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 144 FTIYILRSMFFSCV 103
           FT+Y++R+   +C+
Sbjct: 474 FTMYLVRAFCRNCI 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,393
Number of Sequences: 438
Number of extensions: 1017
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)