Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j18
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   0.84 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   0.84 
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    26   1.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   1.5  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   1.9  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   2.6  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   3.4  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    24   4.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    23   7.9  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 52  SSLQHSAAAIYSASVLESATTDCFLELHAIGPPFI 156
           SSL  + A I+S S    A +  F+ LH +G P +
Sbjct: 791 SSLDWNFAFIHSKSAENQAISAIFMFLHTVGAPIL 825


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 116 SVVALSSTEAEYIAAAECCKELLYIRDLVKEITNENL 6
           SV+       +YI + + C E   IRDL++ ++N  L
Sbjct: 689 SVIPCQLLVGDYILSPKICVERKSIRDLIQSLSNGRL 725


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 92  EAEYIAAAECCKELLYIRDLVKEITNENLD 3
           EA+Y+A  E  K+L+  RD +K I NE +D
Sbjct: 161 EAKYLANPEKYKKLILARD-IKGIENEIVD 189


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 31   TRSLIYSSSLQHSAAAIYSASVLESAT 111
            T + I SSS+ +S+ AI S+SVL S+T
Sbjct: 3212 TSTPITSSSVLNSSTAITSSSVLNSST 3238



 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 31   TRSLIYSSSLQHSAAAIYSASVLESAT 111
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 2420 TSTSITSSSVLNSSTPITSSSVLNSST 2446



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 31  TRSLIYSSSLQHSAAAIYSASVLESAT 111
           T + I SSS+ +S+  I S+SVL S+T
Sbjct: 452 TSTPITSSSVLNSSTPITSSSVLNSST 478



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 31  TRSLIYSSSLQHSAAAIYSASVLESAT 111
           T + I SSS+ +S+  I S+SVL S+T
Sbjct: 632 TSTPITSSSVLNSSTPITSSSVLNSST 658



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 31   TRSLIYSSSLQHSAAAIYSASVLESAT 111
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 1532 TSTPITSSSVLNSSTPITSSSVLNSST 1558



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 31   TRSLIYSSSLQHSAAAIYSASVLESAT 111
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 1916 TSTPITSSSVLNSSTPITSSSVLNSST 1942



 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 31   TRSLIYSSSLQHSAAAIYSASVLESAT 111
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 2108 TSTPITSSSVLNSSTPITSSSVLNSST 2134



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 43  IYSSSLQHSAAAIYSASVLESAT 111
           I SSS+ +S+  I S+SVL S+T
Sbjct: 756 ITSSSILNSSTPITSSSVLNSST 778



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 43   IYSSSLQHSAAAIYSASVLESAT 111
            I SSS+ +S+  I S+SVL S+T
Sbjct: 1236 ITSSSILNSSTPITSSSVLNSST 1258



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 43   IYSSSLQHSAAAIYSASVLESAT 111
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3096 ITSSSIVNSSTPITSSSVLNSST 3118



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 43   IYSSSLQHSAAAIYSASVLESAT 111
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3180 ITSSSIVNSSTPITSSSVLNSST 3202



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 43   IYSSSLQHSAAAIYSASVLESAT 111
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3456 IASSSILNSSTPITSSSVLNSST 3478


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 16  FVISFTRSLIYSSSLQHSAAAIYSASVLESATTDCFLELHAI 141
           +V +F    IY+S    SAA + +A V +  T D  +E  A+
Sbjct: 488 YVCNFLPRAIYTSGKASSAAGLTAAVVKDEETGDFTIEAGAL 529


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 122 FLSSMQLVHHSSRSQNQKYFVSCQDHQRNQNH 217
           +L + Q  HHS +S +     S + H++  NH
Sbjct: 87  YLETFQSKHHSPQSFSASVITSMEIHEQLANH 118


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +1

Query: 79  IYSASVLESATTDCFLELHAIGPPFIQITKPEVLRLVSGSPAKSESQK 222
           I S SV+ SA TD         PPF+  TKP V +      A SE+ K
Sbjct: 658 ISSRSVI-SAATDSKPSTRT-SPPFVNNTKPIVAKSPVTVTASSETNK 703


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 18  RNFFYQVSNI*QFLTAFCSSNI 83
           R    QV N+ + LTAFCS +I
Sbjct: 98  RELAQQVYNVLEKLTAFCSKHI 119


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 167  NQKYFVSCQDHQRNQNHKNLSIYCHL 244
            NQK+ +SC D  +N  H+ +    H+
Sbjct: 1362 NQKFCLSCVDMLKNLEHELIKHLKHM 1387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.128    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,650
Number of Sequences: 5004
Number of extensions: 20476
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)