Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17j18
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 73 3e-14
04_01_0630 - 8354628-8355803,8355837-8355926 71 2e-13
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 71 2e-13
04_03_0631 - 18190195-18190686,18190866-18191066 68 1e-12
07_03_0346 - 17010472-17010843 48 2e-06
09_02_0336 - 7397745-7398308,7398813-7400723 46 5e-06
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 30 0.32
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873... 28 1.3
11_01_0425 - 3268975-3269409 26 5.2
03_02_0700 - 10517754-10519100 26 5.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 26 5.2
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 26 6.9
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 25 9.2
>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 73.3 bits (172), Expect = 3e-14
Identities = 31/93 (33%), Positives = 58/93 (62%)
Frame = -2
Query: 299 KNILRFIKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRK 120
+ ++R++K + E G+HY+ +L G+ DS++ D D ++TSG+V + GG ++W S K
Sbjct: 848 ERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCK 907
Query: 119 QSVVALSSTEAEYIAAAECCKELLYIRDLVKEI 21
Q+++ S+ EAE A E ++RDL+ ++
Sbjct: 908 QTILTRSTMEAELTALDTATVEAEWLRDLLMDL 940
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = -2
Query: 299 KNILRFIKSSKEKGIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSR 123
KN+ R++ +++ G+ + K + L G+ D+ + DP RS +GFV G I+W S
Sbjct: 223 KNVFRYLNGTRDLGLFFKKNQGSTLIGYTDAGYLSDPHNARSQTGFVFLQGGTAISWKSS 282
Query: 122 KQSVVALSSTEAEYIAAAECCKELLYIRDLVKEI 21
KQ++VA S+ +E IA E +E +++R +V I
Sbjct: 283 KQTLVATSTNHSEIIALYEASRECVWLRRMVNHI 316
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 70.9 bits (166), Expect = 2e-13
Identities = 29/93 (31%), Positives = 56/93 (60%)
Frame = -2
Query: 299 KNILRFIKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRK 120
+ ++R++K + GIHY+ +L G+ DS++ D D ++TSG+ + GG ++W S K
Sbjct: 804 ERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCK 863
Query: 119 QSVVALSSTEAEYIAAAECCKELLYIRDLVKEI 21
Q+++ S+ EAE A E ++R+L+ ++
Sbjct: 864 QTILTRSTMEAELTALDTATVEAEWLRELLMDL 896
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = -2
Query: 230 LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIAAAECCKEL 51
L G+ DSD+AG R+ST+G ++ ++WS +KQ+ +ALS+ EAEY+AA CC +L
Sbjct: 73 LLGYSDSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGSCCAQL 132
Query: 50 LYIRDLVK 27
L+++ +K
Sbjct: 133 LWMKQTLK 140
>07_03_0346 - 17010472-17010843
Length = 123
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 299 KNILRFIKSSKEKGIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGF 165
K ILR++K S G+H G L + D+D+AG PD+RRSTSG+
Sbjct: 71 KRILRYVKGSLSAGLHIGTGPVKSLTAYSDADWAGCPDSRRSTSGY 116
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = -2
Query: 299 KNILRFIKSSKEKGIHYSKGDNI-LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSR 123
K +L +++ +K + Y + +++ + G+ DSDFA D +STSG+V + GG I+W S
Sbjct: 766 KKVLHYLQGTKGLMLSYRRSESLQIVGYSDSDFA--KDNTKSTSGYVFTLAGGAISWKSS 823
Query: 122 K 120
K
Sbjct: 824 K 824
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 287 RFIKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIW 156
R+++ + + + + D L G+ DSDFA + D RRS + V++
Sbjct: 363 RYLRGTTDACSKFGRTDKGLVGYVDSDFAANLDKRRSFTVKVLY 406
>01_06_0227 -
27686525-27686607,27686731-27686803,27687027-27687315,
27687755-27687832,27687869-27687992,27688796-27688940,
27689046-27689166,27689386-27689542,27690704-27690840,
27691863-27692122,27692199-27692387,27692572-27692775,
27693390-27693436,27694435-27694462
Length = 644
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -2
Query: 281 IKSSKEKGIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVAL 102
+K ++ + H ++G G D + A D TSG V+ N GP + Q ++L
Sbjct: 350 LKQNRLQRDHVNEGSPSYVGE-DQNNASDCPNNDDTSGGVVATNNGPRNRNGSTQKAMSL 408
Query: 101 SSTEAEYIA 75
S+ EY A
Sbjct: 409 PSSPHEYRA 417
>11_01_0425 - 3268975-3269409
Length = 144
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 236 NILRGFCDSDFAGDPDTRRSTS 171
+ILRGFCD++ A P + S
Sbjct: 112 DILRGFCDAELAAPPPPSTNAS 133
>03_02_0700 - 10517754-10519100
Length = 448
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 133 HAIGPPFIQITKPEVLRLVSGSPAKSES 216
H PPF+ KP VL + SP E+
Sbjct: 127 HPETPPFVNDVKPRVLLVTGSSPKPCEN 154
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 151 FIQITKPEVLRLVSGSPAKSESQKP 225
F++ITKPE SP ES KP
Sbjct: 2958 FVEITKPEFSTDEEHSPKADESNKP 2982
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 101 SSTEAEYIAAAECCKELLYIRDLVKEI 21
+S+E I + CC +LY+ L++E+
Sbjct: 2051 TSSEENIILSQPCCDNVLYLLKLIQEL 2077
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -2
Query: 248 SKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEA 87
S+G++ R + D D G P RR G GG + S VA S TEA
Sbjct: 179 SRGNSDSRSYDDEDDDGPPGYRRERRG------GGRFDDAGSSMSGVAASKTEA 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.128 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,137,472
Number of Sequences: 37544
Number of extensions: 132120
Number of successful extensions: 386
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -