Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17j12
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 284 1e-77
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 146 3e-36
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 137 2e-33
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 131 9e-32
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 131 9e-32
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 100 4e-22
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 94 2e-20
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 91 1e-19
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 81 1e-16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 79 9e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 77 2e-15
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 76 5e-15
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 71 2e-13
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 65 1e-11
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 62 6e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 62 1e-10
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 60 4e-10
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 59 7e-10
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 54 2e-08
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 49 6e-07
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 40 5e-04
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 36 0.006
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.032
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.032
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.073
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.30
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.52
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.68
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.68
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.90
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 29 0.90
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 29 0.90
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 0.90
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.2
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 1.6
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 1.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.1
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 2.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 3.6
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 3.6
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 4.8
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.8
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 26 4.8
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.8
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 6.4
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 6.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 8.4
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 8.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 8.4
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 8.4
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 8.4
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.4
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 284 bits (696), Expect = 1e-77
Identities = 132/193 (68%), Positives = 164/193 (84%)
Frame = +1
Query: 130 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 309
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVLKQL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63
Query: 310 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 489
E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVYNMS
Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123
Query: 490 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLA 669
EDPGD++++ +GGL EQIR+LREVIELPL NPELF+RVGI PPKG LLYGPPGTGKTLLA
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 183
Query: 670 RAVASQLDANFLR 708
RAVA+ L NFL+
Sbjct: 184 RAVAASLGVNFLK 196
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 146 bits (354), Expect = 3e-36
Identities = 80/196 (40%), Positives = 114/196 (58%), Gaps = 4/196 (2%)
Frame = +1
Query: 133 EKAFQDYRKKLMEHK----EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 300
E Q Y +K+ + + + L+ Q L + +++ LQ G VGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 301 KQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 480
K + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 481 MSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 660
M E D TY +GGL++QI++++EVIELP+ +PELF +GI PKG LLYGPPGTGKT
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKT 193
Query: 661 LLARAVASQLDANFLR 708
LLARAVA D F+R
Sbjct: 194 LLARAVAHHTDCKFIR 209
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 137 bits (331), Expect = 2e-33
Identities = 70/187 (37%), Positives = 114/187 (60%), Gaps = 2/187 (1%)
Frame = +1
Query: 154 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 327
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L+ + + I
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAI 71
Query: 328 VKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 507
V +T G YVV LD+ LK VAL + ++ LP E D + + ++ DV
Sbjct: 72 VGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
Query: 508 TYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQ 687
+Y+ +GGL Q +++RE +ELPL +L+ ++GI PP+G LLYGPPGTGKT+L +AVA+
Sbjct: 132 SYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 191
Query: 688 LDANFLR 708
ANF+R
Sbjct: 192 TAANFIR 198
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 131 bits (317), Expect = 9e-32
Identities = 61/129 (47%), Positives = 85/129 (65%)
Frame = +1
Query: 322 FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPG 501
+++ ++VV ++ ++ G RV D I LP ++DP V M E+
Sbjct: 115 YVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKP 174
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVA 681
DVTY +GG +EQI +LREV+ELPL++PE FV++GI PPKG +LYGPPGTGKTL ARAVA
Sbjct: 175 DVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVA 234
Query: 682 SQLDANFLR 708
++ DA F+R
Sbjct: 235 NRTDATFIR 243
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 131 bits (317), Expect = 9e-32
Identities = 65/184 (35%), Positives = 111/184 (60%)
Frame = +1
Query: 157 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 336
+++ +H +E + +++LK ++ + N + ++ VG L+++ ++ + +
Sbjct: 73 QRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVG-TLEEIIDDDHAIVS 131
Query: 337 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 516
T GP Y V +DK+ L+ G V L ++I+ L + DP++ M + +Y+
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYA 191
Query: 517 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 696
IGGL+ QI++++E +ELPL +PEL+ +GI PPKG +LYG PGTGKTLLA+AVA+Q A
Sbjct: 192 DIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 251
Query: 697 NFLR 708
FLR
Sbjct: 252 TFLR 255
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 99.5 bits (237), Expect = 4e-22
Identities = 48/111 (43%), Positives = 70/111 (63%)
Frame = +1
Query: 376 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLR 555
++ +L G + ++ + I+ LP E D V M ++ YS IGGL +QI +L
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELF 198
Query: 556 EVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLR 708
E I LP+ + F ++G+ PPKGCL++GPPGTGKTLLARA A+Q +A FL+
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLK 249
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/67 (61%), Positives = 53/67 (79%)
Frame = +1
Query: 496 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARA 675
P VT+S+IGGLQ QI Q+R+++ELP NPELF I PP+G LLYGPPGTGKT++ RA
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRA 332
Query: 676 VASQLDA 696
VA++ +A
Sbjct: 333 VAAEANA 339
Score = 75.8 bits (178), Expect = 6e-15
Identities = 35/72 (48%), Positives = 51/72 (70%)
Frame = +1
Query: 490 EDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLA 669
E P +V +S IGG +E ++L+E +E PL + E F R+G+ PPKG LLYGPPG KT+ A
Sbjct: 541 ESP-NVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITA 599
Query: 670 RAVASQLDANFL 705
+A+A++ NF+
Sbjct: 600 KAIATETGLNFI 611
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/82 (50%), Positives = 57/82 (69%)
Frame = +1
Query: 457 EVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLY 636
E +P+ +V Y IGG + Q+ Q+RE++ELPL +P+LF +GI PP+G L+Y
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMY 264
Query: 637 GPPGTGKTLLARAVASQLDANF 702
GPPGTGKTL+ARAVA++ A F
Sbjct: 265 GPPGTGKTLMARAVANETGAFF 286
Score = 87.4 bits (207), Expect = 2e-18
Identities = 37/68 (54%), Positives = 53/68 (77%)
Frame = +1
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVA 681
+V + IGGL+E R+LRE +++P+M E F+R G+TP KG L +GPPGTGKTLLA+A+A
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIA 552
Query: 682 SQLDANFL 705
++ ANF+
Sbjct: 553 NECSANFI 560
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 81.4 bits (192), Expect = 1e-16
Identities = 34/74 (45%), Positives = 53/74 (71%)
Frame = +1
Query: 484 SHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTL 663
+ E P D++ S IGGL + I +L E++ +P+ +PE++ GI PP+G LL+GPPG GKT+
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTM 223
Query: 664 LARAVASQLDANFL 705
LA A+A++L F+
Sbjct: 224 LANALANELGVPFI 237
Score = 69.7 bits (163), Expect = 4e-13
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = +1
Query: 496 PGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARA 675
PG V+++ IG L+ +L+ I P+ PEL+ VGI+ P G LL+GPPG GKTLLA+A
Sbjct: 487 PG-VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKA 545
Query: 676 VASQLDANFL 705
VA++ ANF+
Sbjct: 546 VANESKANFI 555
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 78.6 bits (185), Expect = 9e-16
Identities = 32/61 (52%), Positives = 51/61 (83%)
Frame = +1
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVA 681
++ +++IGGL++ I QL+E++ LPL+ PE+F+ + ITPP+G L +GPPGTGKTL+AR +A
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427
Query: 682 S 684
+
Sbjct: 428 A 428
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 77.4 bits (182), Expect = 2e-15
Identities = 31/60 (51%), Positives = 47/60 (78%)
Frame = +1
Query: 505 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVAS 684
+++ ++GGL I QL+E++ LPL+ PE+F R + PP+G L +GPPGTGKTL+ARA+A+
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAA 322
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 115 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 240
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 76.2 bits (179), Expect = 5e-15
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +1
Query: 505 VTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVAS 684
V + IGGL+E LR+ ++LPL PELF + G+ P G LLYGPPGTGKTLLA+AVA+
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVAT 710
Query: 685 QLDANFL 705
+L F+
Sbjct: 711 ELSLEFV 717
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Frame = +1
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVG--ITPPKGCLLYGPPGTGKTLLARA 675
DV++ IGG+ E + QL + + PL PE+F G ++ PKG LLYGPPG GKT+LA+A
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKA 144
Query: 676 VASQLDANFL 705
+A Q A F+
Sbjct: 145 LAKQSQATFI 154
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/74 (45%), Positives = 48/74 (64%)
Frame = +1
Query: 481 MSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 660
+S+ +P V +S I GL + L+E + P + PELF + P +G LL+GPPGTGKT
Sbjct: 370 ISNHEP--VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKT 426
Query: 661 LLARAVASQLDANF 702
+LARAVA++ A F
Sbjct: 427 MLARAVATEAKATF 440
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 62.5 bits (145), Expect = 6e-11
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +1
Query: 484 SHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTL 663
+HE + ++ + G+ E ++ E ++ L NP+ + R+G P+G +L GPPGTGKTL
Sbjct: 286 NHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTL 344
Query: 664 LARAVASQLDANFL 705
LA+A A + + FL
Sbjct: 345 LAKATAGEANVPFL 358
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 61.7 bits (143), Expect = 1e-10
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +1
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVA 681
+V +S + G+ E +L E+++ L +P F R+G P+G LL GPPGTGKT+LARAVA
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVA 321
Query: 682 SQLDANF 702
+ + F
Sbjct: 322 GEANVPF 328
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 59.7 bits (138), Expect = 4e-10
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +1
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVA 681
+V + I GL+ L+E + LP+ P+LF G P G LLYGPPGTGK+ LA+AVA
Sbjct: 125 NVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVA 183
Query: 682 SQLDANF 702
++ + F
Sbjct: 184 TEAGSTF 190
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 58.8 bits (136), Expect = 7e-10
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = +1
Query: 502 DVTYSAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVA 681
+V + I GL+ L+E + P + P+LF + P +G LL+GPPGTGKT+LARAVA
Sbjct: 455 EVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVA 513
Query: 682 SQ 687
++
Sbjct: 514 TE 515
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 520 IGGLQEQIRQL-REVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDA 696
IGGL + + R L P + ++GI KG LLYGPPGTGKTL+AR + L+A
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 49.2 bits (112), Expect = 6e-07
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +1
Query: 520 IGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 699
I G+QE +R++IE P+ ++ + + P G LL+G PG GKT LA A++S
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 700 FL 705
F+
Sbjct: 668 FI 669
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 574 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 693
L N + + GI +G LLYGPPG+GKT A+A +LD
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELD 267
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +1
Query: 103 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 282
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 283 IVGEVLKQLTEEKFIVK 333
GEVL+Q+ E K
Sbjct: 591 QKGEVLEQVVAESEAAK 607
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.032
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 106 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 270
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 33.5 bits (73), Expect = 0.032
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 631 LYGPPGTGKTLLARAVASQLDANFLRW 711
L GPPG GKT + +++AS L+ F R+
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRF 602
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.073
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 133 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 258
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 613 PPKGCLLYGPPGTGKTLLARAVAS 684
P L GP GTGKTLL +A+AS
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALAS 636
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.52
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 124 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 273
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 29.1 bits (62), Expect = 0.68
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = +1
Query: 424 TTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLQEQIRQLREVIELPLMNPELFVRV 603
T L R +P + L Y + DV+ Q+ I ++ + + + V+
Sbjct: 166 TMLEFKRSIPEYRNSLFYTLIGRKKADVSID-----QKLIGDIKYFNKELNASQKKAVKF 220
Query: 604 GITPPKGCLLYGPPGTGKTLLARAVASQL 690
I + L++GPPGTGKT + QL
Sbjct: 221 SIAVKELSLIHGPPGTGKTHTLVEIIQQL 249
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 112 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 288
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 289 GE 294
E
Sbjct: 463 SE 464
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 595 VRVGITPPKGCLLYGPPGTGKTLLARAVASQL 690
VR ++ P L+ GPPGTGKT+ + +V L
Sbjct: 401 VRAVLSKPLS-LIQGPPGTGKTVTSASVVYHL 431
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVASQLDANFL 705
+L+G GTGKT LAR +A + F+
Sbjct: 124 ILWGSAGTGKTTLARLIAVTTKSRFI 149
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 595 VRVGITPPKGCLLYGPPGTGKTLLARAVASQLDAN 699
++ G + L+ GPP TGKT +A +A L ++
Sbjct: 58 IQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSD 92
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVASQL 690
L YGPPGTGKT A A ++
Sbjct: 60 LFYGPPGTGKTSTILACARKI 80
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 619 KGCLLYGPPGTGKTLLARAVA 681
K LL GPPG GKT A VA
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVA 430
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 284 ICPTLCRAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 138
+ PTL R RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVASQLDANFL 705
++ GP G+GKT +A+AV+ +L ++
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLGFEYI 43
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 666 EQSLSCTRRSVQQTSFGWSDTDSNKQLWVH*GQFNHLSQLSNLFLKTSYGRIGHITRI 493
E+S+ + QT+ DS+ + Q + +SQ+++L +Y R HITR+
Sbjct: 640 EESVGTSSLRTSQTTSTIVSNDSSSTASIP-SQISRISQVNSLLNDYNYNRQSHITRV 696
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 169 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 306
E + +R+ + ++Q+KDL+ D DL+ L+S+ V + K+
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKE 1661
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 616 PKGCLLYGPPGTGKTLLARAVASQLDANFLR 708
PKG LYG G GKT L L N R
Sbjct: 118 PKGIYLYGDVGCGKTALMDLFYHNLPPNVTR 148
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -1
Query: 426 GHVKGNSCSSFKLVFVKLPTTANNVARAISSFYNK-----FFFCELFQDFSNYL 280
GH+ C FK +V N+V +S +Y K FF C L + SN L
Sbjct: 1429 GHLMHLGC--FKNYYVARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVL 1480
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 574 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLR 708
LMN +R + K LL G PG GKT L A+A + +R
Sbjct: 1546 LMNASKVLRA-LQVLKPILLEGSPGVGKTSLITALARETGHQLVR 1589
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 151 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 315
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q + LK++ E
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI-RSLKEMEE 141
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVASQLDANFLRW 711
L+ GPPGTGKT + S L + R+
Sbjct: 1149 LIQGPPGTGKTKTIIGIISALLVDLSRY 1176
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVA 681
++ G PGTGKT LA VA
Sbjct: 12 IICGTPGTGKTTLAEQVA 29
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = -1
Query: 672 PREQSLSCTRRSVQQTSFGWSDTDSNKQ 589
PRE++++ TR++ ++ +SD+D+ +Q
Sbjct: 216 PREENVTITRKTKLSSNILYSDSDTERQ 243
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 613 PPKGCLLYGPPGTGKTLLARAV 678
PP + GPPGTGK+ L +++
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKSL 94
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVASQL 690
L YG PGTGKT A++ +L
Sbjct: 56 LFYGSPGTGKTSTILALSREL 76
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 205 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVL-KQLTEEKFIVKAT 339
RD+L+DL+++ + +NDL+ L Q+V E++ LT+ K I++ +
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 307 AVSRLLQLFVQHFVGLSGHFHSCHIVWSNLLVGH 206
A + L V GLSG ++ CH WSN + +
Sbjct: 247 AQNNSLDFIVNDHQGLSGDYNLCHF-WSNFEIAN 279
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 628 LLYGPPGTGKTLLARAVASQLDANFLRW 711
L+ GP G GK+ + +A +L + + W
Sbjct: 109 LICGPSGCGKSTAVQVLAKELGYSLIEW 136
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 637 GPPGTGKTLLARAVASQLDAN 699
GP GTGKT +AV++ L N
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKN 1910
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 592 FVRVGITPPKGCLLYGPPGTGKTLL 666
F+ +T + + GPPG+GK++L
Sbjct: 2505 FLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 720 PMTPP*KVSIEL*SHSPREQSLSCTRRSVQQTSFGWSDTDSNKQLW 583
PM+ V+IE +PR+ R + FGW TD+ K +W
Sbjct: 592 PMSEELSVAIETGHVNPRDDFK--VRARIMADEFGWDVTDARK-IW 634
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 586 ELFVRVGITPPKGCLLY--GPPGTGKTLLARAVASQLDANF 702
E F R + G LY G PGTGKT+L V + +++
Sbjct: 180 ESFFRQHLDANAGGALYVSGAPGTGKTVLLHNVLDHVVSDY 220
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.4
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 627 TSFGWSDTDSNKQLWVH*GQFNHLSQLSNLFLKTSYGRIGHITRI-LMTHVVN*GINLSR 451
TSFG+++ +SN+ QF+ + N F+ G TR+ L+T V N G+
Sbjct: 179 TSFGFAEFESNE-------QFSRALEALNDFVVPPLYEGGPSTRLSLITDVENEGLYREW 231
Query: 450 QMSHYCKS 427
Q S Y ++
Sbjct: 232 QTSRYARN 239
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 115 DMEPLREKAFQDYRKKLMEHKEV 183
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 720 PMTPP*KVSIEL*SHSPREQSLSCTRRSVQQTSFGWSDTDSNKQLW 583
PM+ V+IE +PR+ R + FGW TD+ K +W
Sbjct: 592 PMSEELSVAIETGHVNPRDDFK--VRARIMADEFGWDVTDARK-IW 634
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 613 PPKGCLLYGPPGTGKTLLARAVASQL 690
P L GP G GKT L +A+A L
Sbjct: 531 PLASFLFLGPTGVGKTALTKALAEFL 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,928
Number of Sequences: 5004
Number of extensions: 59283
Number of successful extensions: 275
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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