Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j09
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   5.2  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   6.9  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   9.1  

>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 296 ILDSEVCCINYRRDRFVGKKSKT-PTPQDV 382
           IL   +CCI +R  R+ G  SKT   P +V
Sbjct: 72  ILTLYICCITFRFIRYPGTLSKTWKNPSEV 101


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 460 RYRLNRNTLSHSCTERHAHLFL 525
           RYR   N L H C+E H  L L
Sbjct: 631 RYRETLNLLDHGCSELHHRLKL 652


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 368 TPQDVSWHSSVEPLFRT*LYS*DREINDHFTGT 466
           +P ++S HS+ +PL  T + S   +  D F+G+
Sbjct: 80  SPPELSVHSAQQPLIPTSIASSSAQTGDTFSGS 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,409
Number of Sequences: 5004
Number of extensions: 48491
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)