Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j09
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    31   0.58 
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    30   1.8  
11_01_0267 + 2012645-2013085                                           29   4.1  
02_01_0406 - 2958933-2962076                                           27   9.4  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 608 PADLHDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVHE 492
           PADL D + G  G+H  P ST+    G +   A  +  E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 517 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCSSA 624
           L +PP    +V  GD  + A + P  ASC++AG C++A
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136


>11_01_0267 + 2012645-2013085
          Length = 146

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 421 LCSKQRFHGTMPGDILRRRCLALLTHKTIATIINATDF*IENSSGHDSVDE 269
           LC K   H T P +    +    LTH  +A ++ A      N+ G++  DE
Sbjct: 16  LCDKHNTHSTCPSEHSETKARTELTHGDVAVVMAALGLSF-NAEGNEVEDE 65


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 469 LNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGTASCKSAGV-CSSAG 627
           +N  +L+ SCTE+     L     +S +GG   A    GT  CK  G+ CS  G
Sbjct: 26  INLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDCCKWDGIACSQDG 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,687
Number of Sequences: 37544
Number of extensions: 313589
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)