Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j09
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    35   0.042
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    27   8.4  
AF025453-2|AAM98052.1|  225|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF025453-1|AAK31407.1|  520|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +2

Query: 143 SSVIYFFLLTTSLLVDNIRIGIKPRAFEK*RDVDVENTGAIILIDAV 283
           SSV+YFF ++T +++ +I +G++ R F      DV + G I+ I ++
Sbjct: 98  SSVLYFFDVSTKMIISSISLGVESRLF------DVSSNGTIVAIGSI 138


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore complex
            protein protein6, isoform a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 74   FSLIVN*NHFVRSFVNSVKYN*ASSVIYFFLLTTSLLVDNIR 199
            FSL+V+  HF  +F  + ++N  S  ++F +   ++++D +R
Sbjct: 1333 FSLLVDNQHFDEAFDIARQFNLDSHRLFFTMTREAIMIDALR 1374


>AF025453-2|AAM98052.1|  225|Caenorhabditis elegans Hypothetical
           protein C08F1.4b protein.
          Length = 225

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 233 RDVDVENTGAIILIDAVMTARIL-DSEVCCINYRRDRFVGKKSKTPTPQDVSWHSSVEPL 409
           RDVD+E+   +I  D +MT  ++ DS +   +    R + KK+ +P     +W S ++P+
Sbjct: 135 RDVDMESLKKVIRWDDMMTDYVINDSFIIEAHIEILRIIEKKNFSP-----NWLSYMKPV 189

Query: 410 F 412
           F
Sbjct: 190 F 190


>AF025453-1|AAK31407.1|  520|Caenorhabditis elegans Hypothetical
           protein C08F1.4a protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 233 RDVDVENTGAIILIDAVMTARIL-DSEVCCINYRRDRFVGKKSKTPTPQDVSWHSSVEPL 409
           RDVD+E+   +I  D +MT  ++ DS +   +    R + KK+ +P     +W S ++P+
Sbjct: 135 RDVDMESLKKVIRWDDMMTDYVINDSFIIEAHIEILRIIEKKNFSP-----NWLSYMKPV 189

Query: 410 F 412
           F
Sbjct: 190 F 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,936
Number of Sequences: 27780
Number of extensions: 280594
Number of successful extensions: 844
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)