Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17j08
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 82 1e-17
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 75 3e-15
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 69 1e-13
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 67 5e-13
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 60 6e-11
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 58 2e-10
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 56 1e-09
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 56 1e-09
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 51 4e-08
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.072
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 0.17
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 0.38
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 1.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 1.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 1.6
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 1.6
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 2.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 2.7
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 2.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 24 3.6
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 24 4.7
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 24 4.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 24 4.7
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 24 4.7
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 24 4.7
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 23 6.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 6.3
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 23 8.3
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 23 8.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 23 8.3
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 23 8.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 23 8.3
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 82.2 bits (194), Expect = 1e-17
Identities = 42/86 (48%), Positives = 59/86 (68%)
Frame = +1
Query: 25 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 204
N + P SQ Y ++L R LPV++ + +F+++ + +Q IV VGETGSGKTTQIPQ+ V
Sbjct: 54 NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQF-V 112
Query: 205 EFAAVSGLGKAKGVACTQPRRVAAMS 282
+ + L + +ACTQPRRVAAMS
Sbjct: 113 LYDELPHLTNTQ-IACTQPRRVAAMS 137
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 74.5 bits (175), Expect = 3e-15
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +1
Query: 79 RLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQ 258
R LPV++YK+D ++ +N +Q +++V ETGSGKTTQ+PQ+ E G K + CTQ
Sbjct: 415 RKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKG---NKKICCTQ 471
Query: 259 PRRVAAMS 282
PRRVAAMS
Sbjct: 472 PRRVAAMS 479
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 69.3 bits (162), Expect = 1e-13
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +1
Query: 76 KRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACT 255
+R GLPV++ + F+ ++ +Q +VL+GETGSGKTTQI Q+ E S +K + CT
Sbjct: 506 QREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTS---DSKMIGCT 562
Query: 256 QPRRVAAMS 282
QPRRVAAMS
Sbjct: 563 QPRRVAAMS 571
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 66.9 bits (156), Expect = 5e-13
Identities = 33/86 (38%), Positives = 50/86 (58%)
Frame = +1
Query: 25 NKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSV 204
N ++ S Y +R+R LP WE + M + Q +V+ GETGSGK+TQ+ Q+ +
Sbjct: 556 NNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFIL 615
Query: 205 EFAAVSGLGKAKGVACTQPRRVAAMS 282
+ SG + V CTQPRR++A+S
Sbjct: 616 DHYLSSGEKDLQTVVCTQPRRISAIS 641
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 60.1 bits (139), Expect = 6e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +1
Query: 64 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 243
++L +R LP+WE + + + ++ IV+VGETGSGK+TQIPQ F +
Sbjct: 88 DILEQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQ----FLNECPYAQEGC 143
Query: 244 VACTQPRRVAAMS 282
VA TQPRRVAA++
Sbjct: 144 VAITQPRRVAAVN 156
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 58.0 bits (134), Expect = 2e-10
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = +1
Query: 28 KYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVE 207
K T ++ Y E +R LP + + + ++ +Q +++VGETGSGKTTQ+ Q+ E
Sbjct: 475 KDTEFARTKSYRE---QREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYE 531
Query: 208 FAAVSGLGKAKGVACTQPRRVAAMS 282
G + + CTQPRRVAAMS
Sbjct: 532 ----DGYHRNGMIGCTQPRRVAAMS 552
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 56.0 bits (129), Expect = 1e-09
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +1
Query: 70 LRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVA 249
++K+L LP+ +Y+N + + +Q +++G TG GKTTQIPQ+ E S G +
Sbjct: 20 IQKKL-LPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGI---IG 75
Query: 250 CTQPRRVAAMS 282
CTQPRR+ A S
Sbjct: 76 CTQPRRLVAKS 86
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 56.0 bits (129), Expect = 1e-09
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 64 ELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKG 243
E+ RL LP+ + M + + +++ G TGSGKTTQ+PQ+ E S + G
Sbjct: 390 EIQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPG 449
Query: 244 -VACTQPRRVAAMS 282
+A TQPRRVAA+S
Sbjct: 450 MIAITQPRRVAAVS 463
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 50.8 bits (116), Expect = 4e-08
Identities = 28/87 (32%), Positives = 49/87 (56%)
Frame = +1
Query: 22 LNKYTGLPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTTQIPQWS 201
LNK+ S+ + R LP ++ + +N Q +++ G+TG GK+TQIP +
Sbjct: 609 LNKWRQQLESESAEKFKVFRNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFL 668
Query: 202 VEFAAVSGLGKAKGVACTQPRRVAAMS 282
+E + + GKA + T+PRR++A+S
Sbjct: 669 LENSTKN--GKAVKIYVTEPRRISAIS 693
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.072
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 127 LNTHQCIVLVGETGSGKTTQI 189
+ T++ ++LVGETG+GKTT I
Sbjct: 464 VQTNEPLLLVGETGTGKTTTI 484
Score = 25.8 bits (54), Expect = 1.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 121 RLLNTHQCIVLVGETGSGKTT 183
R L + ++LVG+TG GKTT
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTT 1201
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.7 bits (61), Expect = 0.17
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 118 MRLLNTHQCIVLVGETGSGKT 180
M+ + +QCI++ GE+G+GKT
Sbjct: 120 MKSYHENQCIIISGESGAGKT 140
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 0.38
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 58 YHELLRKRLGLPVWEYKNDFMRLLNT---HQCIVLVGETGSGKTTQIPQWSVEFAAVSGL 228
Y E R L ++ D + +N +Q I++ GE+G+GKT FA+V L
Sbjct: 131 YSEKSRDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQAL 190
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 1.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 43 PHSQRYHELLRKRLGLPVWEYKNDF 117
PHS RYH L LG +NDF
Sbjct: 36 PHSSRYHWQLHSNLGESAVFDENDF 60
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 1.6
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Frame = +1
Query: 10 NTPGLNK-YTGLPHSQRYHELLRKR-LGLPVWEYKNDFMRLLNTHQCIV-------LVGE 162
N LNK Y G+ ++ H++ R L + + K + RLLN Q V L+GE
Sbjct: 864 NEEELNKEYEGI---EKGHDIFSWRNLNYDI-QIKGEHRRLLNGVQGFVVPGKLTALMGE 919
Query: 163 TGSGKTT--QIPQWSVEFAAVSG--LGKAKGVACTQPRR 267
+G+GKTT + V+ V+G L +G+ T RR
Sbjct: 920 SGAGKTTLLNVLAQRVDTGVVTGDMLVNGRGLDSTFQRR 958
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 61 HELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKTT 183
H +R R LP+ ND + + I +VG TG+GK+T
Sbjct: 1228 HYSVRYRENLPL--VLNDISVNIKPQEKIGIVGRTGAGKST 1266
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 139 QCIVLVGETGSGKTT 183
+ IVL+GE G+GKTT
Sbjct: 376 EIIVLLGENGTGKTT 390
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 2.1
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 40 LPHSQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCI--VLVGETGSGKTTQI 189
LPH L G + EY N F+R L QC +L G+ G T +
Sbjct: 940 LPHHIFLSSALNVTGGATLHEYGNTFIRQLEYSQCTFKLLDGDKEVGSKTML 991
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 24.6 bits (51), Expect = 2.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 127 LNTHQCIVLVGETGSGKTT 183
+N + + +VG TGSGK+T
Sbjct: 1236 INPSEKVAVVGRTGSGKST 1254
Score = 23.0 bits (47), Expect = 8.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 148 VLVGETGSGKTTQIPQWSVEFAAVSG---LGKAKGVA 249
+++G TGSGK++ I E + G L ++KGV+
Sbjct: 645 IVIGPTGSGKSSLISALLGELSLNKGSYNLPRSKGVS 681
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.6 bits (51), Expect = 2.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 94 VWEYKNDFMRLLNTHQCIVLVGETG 168
+++Y ++ NTH IVL G+ G
Sbjct: 233 IYKYLQEYDEKTNTHSLIVLCGDHG 257
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.2 bits (50), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 136 HQCIVLVGETGSGKTTQIPQWSVEFAAVSG 225
+Q ++VG TGSGK+T E +SG
Sbjct: 607 NQFTLVVGSTGSGKSTLAMALLGELHVISG 636
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 145 IVLVGETGSGKTT 183
I +VG TGSGK+T
Sbjct: 1210 IAIVGRTGSGKST 1222
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 23.8 bits (49), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 145 IVLVGETGSGKTTQIP 192
++LVG G+GK TQ P
Sbjct: 6 LILVGPPGAGKGTQAP 21
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.8 bits (49), Expect = 4.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 145 IVLVGETGSGKTTQIPQ 195
I++VG GSGKTT + Q
Sbjct: 11 IIVVGMAGSGKTTFMQQ 27
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 23.8 bits (49), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 115 FMRLLNTHQCIVLVGETGSGKTTQI 189
++R H CI L E G GKT Q+
Sbjct: 568 YLRWYTHHPCI-LADEMGLGKTVQV 591
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 23.8 bits (49), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 28 KYTGLPHSQRYHELLRKRLGLPVW 99
K TGL S R ELLR+ + P++
Sbjct: 14 KLTGLSRSGRKDELLRRIVDSPIY 37
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 23.8 bits (49), Expect = 4.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 142 CIVLVGETGSGKT 180
CI G+TGSGKT
Sbjct: 558 CIFAYGQTGSGKT 570
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 145 IVLVGETGSGKTT 183
+VLVG+ G+GKTT
Sbjct: 12 LVLVGDGGTGKTT 24
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.4 bits (48), Expect = 6.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 49 SQRYHELLRKRLGLPVWEYKNDFMRLLNTHQCIVLVGETGSGKT 180
S+++ E G Y++ R +N Q I++ GE+G+GKT
Sbjct: 148 SKQFKETKPHIFGTADAAYRSLLERRIN--QSILVTGESGAGKT 189
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 23.0 bits (47), Expect = 8.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 36 WSSAFTTLP*AITKTFRTPSLGIQK 110
W SAF T+P +TK R L K
Sbjct: 501 WESAFETIPEPLTKKEREEFLATCK 525
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 23.0 bits (47), Expect = 8.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 94 VWEYKNDFMRLLN 132
+W+Y DF++ LN
Sbjct: 966 IWKYSQDFVKFLN 978
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 136 HQCIVLVGETGSGKTTQIPQWSVEFAAVS 222
+Q I++ GE+G+GKT + AA++
Sbjct: 163 NQSILVTGESGAGKTENTKRIIQYLAAIA 191
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 145 IVLVGETGSGKTT 183
I LVGE+G GK+T
Sbjct: 613 IALVGESGGGKST 625
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 148 VLVGETGSGKTTQI 189
++VG+ GSGKTT I
Sbjct: 31 LIVGQNGSGKTTII 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,508
Number of Sequences: 5004
Number of extensions: 23130
Number of successful extensions: 130
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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