Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j08
         (282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.94 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   5.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   5.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   8.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   8.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   8.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   8.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 SPMYSARRRNRVREDYPDPPVVCRVCCSKWPRQG*RRGLYSTKTSGC 275
           +P  S     RV  ++    V+CRVC  K    G   G++S +  GC
Sbjct: 45  APQDSENLLGRVLAEFDGTTVLCRVCGDK--ASGFHYGVHSCE--GC 87


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 123 SHEIIFVFPD 94
           SHE +FV PD
Sbjct: 559 SHESVFVVPD 568


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 123 SHEIIFVFPD 94
           SHE +FV PD
Sbjct: 559 SHESVFVVPD 568


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 115 NHFCIPRLGVLNVFV 71
           NH C P L V  V++
Sbjct: 579 NHSCDPNLAVYGVWI 593


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 273 SHSSWLSTGHAFSLA*ATY 217
           SH  WL    AFSL  A Y
Sbjct: 5   SHQVWLVGLLAFSLVGAEY 23


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 273 SHSSWLSTGHAFSLA*ATY 217
           SH  WL    AFSL  A Y
Sbjct: 5   SHQVWLVGLLAFSLVGAEY 23


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 144 YSARRRNRVREDYPDPPV 197
           +S     RVR +Y  PPV
Sbjct: 19  FSVSYDKRVRPNYGGPPV 36


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 144 YSARRRNRVREDYPDPPV 197
           +S     RVR +Y  PPV
Sbjct: 19  FSVSYDKRVRPNYGGPPV 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,112
Number of Sequences: 438
Number of extensions: 1695
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)