Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j03
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499...    29   2.2  
01_05_0163 - 18773962-18774297                                         28   5.0  
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181...    28   6.6  

>06_03_0730 -
           23948801-23949079,23949528-23949588,23949828-23949954,
           23950449-23950485,23950987-23951061,23951489-23951598,
           23952700-23952754,23952833-23952949,23953201-23953355,
           23953577-23953634,23954239-23954460
          Length = 431

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 1   MIFRLKESSTSRSSCFFPGVGRCILADPDACIRRHGGFFVWTAE-TFTNSWCILSREDTH 177
           M   L   S S SSCF    G  +L     C++ H   F W  E  F  S  I SR D  
Sbjct: 1   MADELVTPSQSSSSCFQQHKGGLVLDGYLTCLQLHMALFYWIEELEFECSVGIASRVDVR 60

Query: 178 IKI 186
             +
Sbjct: 61  FSV 63


>01_05_0163 - 18773962-18774297
          Length = 111

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 101 RLMHASGSASMHRPTP 54
           RL HA+G+AS HRP P
Sbjct: 20  RLNHAAGTASSHRPDP 35


>09_06_0230 + 21717225-21717301,21717888-21717972,21718045-21718165,
            21718244-21718368,21718940-21718984,21719082-21719345,
            21720067-21720111,21720182-21720212,21721644-21721693,
            21722433-21724310,21724406-21724564,21724821-21724939,
            21726917-21727059,21727670-21727735,21728184-21728317,
            21728454-21728591,21728927-21729186,21729295-21729406,
            21730727-21730909
          Length = 1344

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 246  LFSGRPSRTKHNKNDYYRRHDP 311
            L+SG+  +TK NKN Y   H+P
Sbjct: 1156 LYSGKSQKTKQNKNIYDFLHNP 1177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,404
Number of Sequences: 37544
Number of extensions: 322170
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)