Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17j03
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   0.99 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 243 RLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQLLFII 374
           ++ S   ++T HN N+Y   +     N   N N +N  +L + I
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 213 RRRACSVKIARLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQL 362
           RR     K +++ S   ++T HN N+Y      +  N+++  N  N+ Q+
Sbjct: 303 RRERERSKESKIISSLSNKTIHNNNNY------KNYNKKLYYNIINIEQI 346


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 226 QARLRVDIVTRYSKFLYAYLHDLIYTTNW*TF 131
           +AR+R   + R S+  + +L  ++  T W  F
Sbjct: 393 KARMRALNIDRVSRVFFPFLFAVLNVTYWIMF 424


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 82  DRQVCTVLRLERSMTTEKCYFL 17
           DRQVC++       TT+   FL
Sbjct: 170 DRQVCSLRMASYGWTTDDLVFL 191


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 82  DRQVCTVLRLERSMTTEKCYFL 17
           DRQVC++       TT+   FL
Sbjct: 170 DRQVCSLRMASYGWTTDDLVFL 191


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -1

Query: 594 FAIFL-SIFCFNCKHSVVF 541
           F ++L   FC NC H  VF
Sbjct: 26  FTMYLVRAFCRNCIHPTVF 44


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 577 YFLFQLQTFCSFFV*HDCHFLYVS 506
           Y  F+L T C F      +FLY S
Sbjct: 61  YVRFKLVTDCIFVTSEPGYFLYTS 84


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -1

Query: 594 FAIFL-SIFCFNCKHSVVF 541
           F ++L   FC NC H  VF
Sbjct: 474 FTMYLVRAFCRNCIHPTVF 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,492
Number of Sequences: 438
Number of extensions: 3726
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)