Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i16
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   2.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   4.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   5.9  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   5.9  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    25   7.8  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 206 EIYPSINLVDLSYLARERFFYQYIFPVSLEHTTEV 310
           +++P I  + L+++ R  F +  IFP  ++H++ +
Sbjct: 568 QLWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGI 602


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 317  LKIDDHNCKVFEIIRRIIRNHKEPNERIQTIDLSTT 424
            + I   +C++    RR + NH +P+ + + ++LS T
Sbjct: 1101 IDIGSIHCEISNFARRPVHNHIDPDIQSKVLNLSNT 1136


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 2   SSVKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKP 130
           + + YKK    + S S  ++ +  F   +  W  YV  H E P
Sbjct: 128 AQLPYKKPVSPYSSSSAVSSTSSSFDRTSPPWLNYVEPHTELP 170


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 236 LSYLARERFFYQYIFPVSLEHTTEVKELKIDDHNCKVFEI---IRRIIRNHKEPN 391
           ++Y+     FY+  +  SL +     E+ +  HN   F++   +R+ IR   +PN
Sbjct: 706 IAYIYTYDEFYKDDYATSLPNVVYTSEVLLSKHNDSAFKVWPKLRKNIRKITKPN 760


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +2

Query: 236 LSYLARERFFYQYIFPVSLEHTTEVKELKIDDHNCKVFEIIRRIIRNHKEPNERIQTIDL 415
           L+ L ++ + Y     + L+H        +++H  + FE + +I  +  +P++ +QT+DL
Sbjct: 49  LTVLEKKLYEYWESLVLKLDHYVAAA---LENHE-QSFEELEKITASLYQPDDNLQTLDL 104

Query: 416 S 418
           S
Sbjct: 105 S 105


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
 Frame = +1

Query: 112 GSHRKAVGRF*PHRHML-SKMLSISQRSKDLVRNISFYQFG------RPQLFSQREVFLP 270
           G+H   VG F PH H   SK + IS    D  R  + ++ G      +  LFS  EV   
Sbjct: 223 GTHIDLVGGFTPHMHEADSKCIQISNVFVD-TRKGALHEAGDLLTPIKEGLFSPNEVIAD 281

Query: 271 IHFPCKFGAHDGS*RIEN 324
           +   C    H G  +++N
Sbjct: 282 LFDLCN-NKHSGRSQLKN 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,014
Number of Sequences: 5004
Number of extensions: 62833
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)