Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i16
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AJ745072-1|CAG32978.1|  400|Caenorhabditis elegans alpha1,3-fuco...    29   3.2  
AF003386-15|AAB54261.2|  400|Caenorhabditis elegans Fucosyl tran...    29   3.2  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   7.3  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   7.3  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical
           protein T05A12.4b protein.
          Length = 975

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 209 IYPSINLVDLSYLARERFFYQYIFPVSLEHTTEVKELKIDDHNC-KVF--EIIRRIIRNH 379
           IYP  N ++L      +FF QY+ P  L     +++  +D +N  +VF  EI+ +++   
Sbjct: 566 IYPLFNFLNLFPFGSPQFFSQYVHPQYLNFALSLRDEALDKNNLPRVFLLEILSKMMSRK 625

Query: 380 KEPNERIQ 403
            + ++ +Q
Sbjct: 626 TKQDKSVQ 633


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
           protein T05A12.4a protein.
          Length = 1622

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 209 IYPSINLVDLSYLARERFFYQYIFPVSLEHTTEVKELKIDDHNC-KVF--EIIRRIIRNH 379
           IYP  N ++L      +FF QY+ P  L     +++  +D +N  +VF  EI+ +++   
Sbjct: 566 IYPLFNFLNLFPFGSPQFFSQYVHPQYLNFALSLRDEALDKNNLPRVFLLEILSKMMSRK 625

Query: 380 KEPNERIQ 403
            + ++ +Q
Sbjct: 626 TKQDKSVQ 633


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
 Frame = +2

Query: 242 YLARERFFYQYIFPVSLEHTTEVKELKIDDHNCKVFEIIRRIIRNHKEPNE--RIQTIDL 415
           YLAR    + YI P+SL    ++ +L           I   ++R+   P E  RI  +  
Sbjct: 372 YLARFILLFSYIIPISLRTNVDMAKLFYSWQIGHDHHIPETVVRSSTIPEELGRISFLLS 431

Query: 416 STTGGLVLRETYTNIVLQRYRSMCTRPDAADDVNCFILQEPSEMMAALQDNRFSG-IKGT 592
             TG L   E +   +     ++    DA ++V   +    S   +AL  + FS  +K  
Sbjct: 432 DKTGTLTKNEMHFKKI--HLGTVAFSGDALEEVEQHV---KSAYDSALVKHPFSAKLKNA 486

Query: 593 VFATVKVKKFTEVLDGGAITF 655
           V +       T VL+ G +++
Sbjct: 487 VESLALCHNVTPVLENGELSY 507


>Z81071-7|CAE11303.1|  313|Caenorhabditis elegans Hypothetical
           protein F28F8.8 protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 218 SINLVDLSYLARERFFYQYIFPVSLEH--TTEVKELKIDDHNCKVFEIIRRIIR-NHKEP 388
           S+  VD+  L    F ++ I P+ L++  +  +++LKIDDH C  F+ I +++  NH + 
Sbjct: 148 SVKKVDVGKLTITGFIHEEI-PMILQYFGSDNIQDLKIDDHIC--FDHIGKVVESNHWKK 204

Query: 389 NERIQTI 409
            + I  I
Sbjct: 205 AKSIHFI 211


>Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK643.3b protein.
          Length = 522

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 45  IRDAPLAIIDSKTTRAHGFCMLWFTSKSRWTILTA*TYAVKNAIYI 182
           + DAPL+   S+  + H FC L F+ + R+  LT  T+ +  A+Y+
Sbjct: 282 VNDAPLS---SQVFQNHLFCRLLFSIQLRYLRLTNFTWMLAEAVYL 324


>Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical
           protein ZK643.3a protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 45  IRDAPLAIIDSKTTRAHGFCMLWFTSKSRWTILTA*TYAVKNAIYI 182
           + DAPL+   S+  + H FC L F+ + R+  LT  T+ +  A+Y+
Sbjct: 282 VNDAPLS---SQVFQNHLFCRLLFSIQLRYLRLTNFTWMLAEAVYL 324


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 544 FAWLLKYKTINVVRRVGSGAHASVALQHYIGVRFSENETAGGA 416
           F W  K+  IN++++VG GA+  V    + G     N+T  GA
Sbjct: 123 FFWEFKHSQINLIKKVGKGAYGEV----FKGTVTRGNKTFNGA 161


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 284 VSLEHTTEVKELKIDDHNCKVFEIIRRIIRNH 379
           +   HTTE    KI+DHN  VF +  +  ++H
Sbjct: 67  IKAPHTTESSMKKIEDHNTLVFIVDEKANKHH 98


>AJ745072-1|CAG32978.1|  400|Caenorhabditis elegans
           alpha1,3-fucosyltransferase homologueprotein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 688 FAIIVNCRSRRKRDCAAVQYLGKFFDFN-SGKHGSFDTRKSV 566
           F +I NC ++ KR+  A+Q LGK  +    GK  S D  KS+
Sbjct: 202 FGLISNCHTKSKRE-LALQELGKHINVTIGGKCASDDRLKSI 242


>AF003386-15|AAB54261.2|  400|Caenorhabditis elegans Fucosyl
           transferase protein 3 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 688 FAIIVNCRSRRKRDCAAVQYLGKFFDFN-SGKHGSFDTRKSV 566
           F +I NC ++ KR+  A+Q LGK  +    GK  S D  KS+
Sbjct: 202 FGLISNCHTKSKRE-LALQELGKHINVTIGGKCASDDRLKSI 242


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 485  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 589
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1947 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 1983


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 485  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 589
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1947 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 1983


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 485  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 589
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1966 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 2002


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 101 LYVVVHIEKPLDDSDRIDICCQKCYLYHNVPKTSYEIYPSINLV 232
           L+  VH  + L D    DI     YL+H +P+ +  + P ++L+
Sbjct: 22  LWNTVHGAQLLPDLGTDDIGKNNEYLFHRIPRATDNLIPIVSLI 65


>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 455 NIVLQRYRSMCTRPDAADDVNCFILQEPSEMMAALQDNRFSGIKGTVFATVKVKKFTEVL 634
           N+    + ++ T+ +A  +   F   +P+E   A+QD+RF  +        KV  F  V 
Sbjct: 31  NVGKSTFFNVLTKSEAQAENFPFCTIDPNESRVAVQDDRFDWLVNHYKPASKVPAFLNVT 90

Query: 635 D 637
           D
Sbjct: 91  D 91


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 646 CAAVQYLGKFFDFNSGKHGSFDTRKSVVLQSGHHFA 539
           C  V Y  KFF+ ++G +  FD R       G HF+
Sbjct: 616 CVLVDYKPKFFNPHTGLYRMFDDRGFSYYTMGLHFS 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,652
Number of Sequences: 27780
Number of extensions: 367407
Number of successful extensions: 1067
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)